Browse Element(s) Details


OsAffx.15100.1.S1_at

Description tigr:9633.m04149
TID=OsAffx.15100.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4443011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g44400OsAffx.27307.1.S1_at11/115+25749263..25751409GATA zinc finger family protein, expressed
LOC_Os05g44410NANA5+25763136..25764371hypothetical protein
LOC_Os05g44420Os.52491.1.A1_at11/115+25771082..25772335expressed protein
LOC_Os05g44430OsAffx.15100.1.S1_at11/115+25774170..25775874hypothetical protein
LOC_Os05g44440OsAffx.8939.1.S1_x_at6/115+25778494..25779154hypothetical protein
LOC_Os05g44440OsAffx.8939.1.S1_at3/115+25778494..25779154hypothetical protein
LOC_Os05g44450OsAffx.8939.1.S1_at2/115+25785052..25786815transposon protein, putative, unclassified
LOC_Os05g44450OsAffx.2606.1.S1_at2/115+25785052..25786815transposon protein, putative, unclassified
LOC_Os05g44450OsAffx.8939.1.S1_x_at1/115+25785052..25786815transposon protein, putative, unclassified
LOC_Os05g44450OsAffx.1436.1.S1_x_at1/115+25785052..25786815transposon protein, putative, unclassified
LOC_Os05g44450Os.10731.2.A1_at1/115+25785052..25786815transposon protein, putative, unclassified
LOC_Os05g44460NANA5+25794514..25797153retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g44470NANA5+25797753..25798574retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g44480NANA5+25799863..25801050retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15100.1.S1_at--716--8971Chr05:25775063..25775083 (21 bp)
TGAAAATGCAGAGCCCAGACGAGCT
LOC_Os05g44430
OsAffx.15100.1.S1_at--1032--5771Chr05:25775587..25775608 (22 bp)
GACGAGCTCTCGCAAGTTGTACTTC
LOC_Os05g44430
OsAffx.15100.1.S1_at--993--2811Chr05:25775597..25775621 (25 bp)
AAGTTGTACTTCGTTCCATGGGCGG
LOC_Os05g44430
OsAffx.15100.1.S1_at--1028--8131Chr05:25775634..25775658 (25 bp)
GGACAATTCTACGTACGCTGGAAGA
LOC_Os05g44430
OsAffx.15100.1.S1_at--463--5571Chr05:25775657..25775681 (25 bp)
GAAAGTCTCCCGAGTGTGCGAGGCA
LOC_Os05g44430
OsAffx.15100.1.S1_at--628--7291Chr05:25775672..25775696 (25 bp)
GTGCGAGGCACAGTTATGATGACAG
LOC_Os05g44430
OsAffx.15100.1.S1_at--574--10331Chr05:25775698..25775722 (25 bp)
TTTAGCCGGGTGATTGTCGATCGCA
LOC_Os05g44430
OsAffx.15100.1.S1_at--865--8711Chr05:25775712..25775736 (25 bp)
TGTCGATCGCACACATGATCAGTAT
LOC_Os05g44430
OsAffx.15100.1.S1_at--391--2411Chr05:25775741..25775765 (25 bp)
AAACACGCGAATCGGTGCAGGCAGA
LOC_Os05g44430
OsAffx.15100.1.S1_at--302--2451Chr05:25775765..25775789 (25 bp)
AAAATCGTGGGCTGGCTAGCTCTAT
LOC_Os05g44430
OsAffx.15100.1.S1_at--951--3351Chr05:25775805..25775829 (25 bp)
CACCGAGACGGAGCAGCGATTCTGT
LOC_Os05g44430
Target Sequence 
TGAAAATGCAGAGCCCAGACGAGCTCTCGCAAGTTGTACTTCGTTCCATGGGCGGGCAGGAGACGCAGGACAATTCTACG
TACGCTGGAAGAAAGTCTCCCGAGTGTGCGAGGCACAGTTATGATGACAGGTTTAGCCGGGTGATTGTCGATCGCACACA
TGATCAGTATCCAAAAACACGCGAATCGGTGCAGGCAGAAAATCGTGGGCTGGCTAGCTCTATGGACAGGAGGCAGAACA
CCGAGACGGAGCAGCGATTCTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15100.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis