Browse Element(s) Details


OsAffx.27307.1.S1_at

Description tigr:9633.m04146
TID=OsAffx.27307.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=GATA zinc finger, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4440011/11GATA zinc finger family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g44350Os.52818.1.S1_at11/115+25724424..25727740expressed protein
LOC_Os05g44360Os.26690.1.S2_a_at11/115+25728005..25733923Oligosaccharyl transferase STT3 subunit homolog, putative, expressed
LOC_Os05g44360Os.26690.1.S1_a_at11/115+25728005..25733923Oligosaccharyl transferase STT3 subunit homolog, putative, expressed
LOC_Os05g44370OsAffx.27305.1.S1_at10/115+25735041..25736085hypothetical protein
LOC_Os05g44380OsAffx.27306.1.S1_at11/115+25737777..25739599MPPN domain containing protein, expressed
LOC_Os05g44390Os.14123.1.S1_x_at11/115+25740498..25743595peptidyl-tRNA hydrolase 2, putative, expressed
LOC_Os05g44390Os.14123.2.S1_at9/115+25740498..25743595peptidyl-tRNA hydrolase 2, putative, expressed
LOC_Os05g44400OsAffx.27307.1.S1_at11/115+25749263..25751409GATA zinc finger family protein, expressed
LOC_Os05g44410NANA5+25763136..25764371hypothetical protein
LOC_Os05g44420Os.52491.1.A1_at11/115+25771082..25772335expressed protein
LOC_Os05g44430OsAffx.15100.1.S1_at11/115+25774170..25775874hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27307.1.S1_at--362--9431Chr05:25750872..25750896 (25 bp)
TCGTGGTGTCCAAGCACTCCAACTC
LOC_Os05g44400
OsAffx.27307.1.S1_at--903--8391Chr05:25751069..25751093 (25 bp)
GGCGCGGACGAATTCCTGATCCATA
LOC_Os05g44400
OsAffx.27307.1.S1_at--768--91Chr05:25751080..25751104 (25 bp)
ATTCCTGATCCATAACCGCATAAGC
LOC_Os05g44400
OsAffx.27307.1.S1_at--708--331Chr05:25751099..25751123 (25 bp)
ATAAGCCCGGACTACCGGCGCCAGG
LOC_Os05g44400
OsAffx.27307.1.S1_at--240--8391Chr05:25751115..25751139 (25 bp)
GGCGCCAGGCTACCTAGGAAACTAT
LOC_Os05g44400
OsAffx.27307.1.S1_at--44--8171Chr05:25751131..25751155 (25 bp)
GGAAACTATTCATTAGCCCAGGAAT
LOC_Os05g44400
OsAffx.27307.1.S1_at--164--10831Chr05:25751187..25751211 (25 bp)
TTGTCCTGCAAACCGCATTTTTGGT
LOC_Os05g44400
OsAffx.27307.1.S1_at--967--10331Chr05:25751204..25751228 (25 bp)
TTTTTGGTTACTCTTTATTTCTCAG
LOC_Os05g44400
OsAffx.27307.1.S1_at--633--191Chr05:25751220..25751244 (25 bp)
ATTTCTCAGCTTCTTAAGTTTCTTT
LOC_Os05g44400
OsAffx.27307.1.S1_at--824--6171Chr05:25751295..25751319 (25 bp)
GAGGAGTTTCTTTCGTAGCACATTT
LOC_Os05g44400
OsAffx.27307.1.S1_at--787--5191Chr05:25751331..25751355 (25 bp)
GAATTTTGTAATGCAGGACTCTTAG
LOC_Os05g44400
Target Sequence 
TCGTGGTGTCCAAGCACTCCAACTCCCACCGCAAGGTGGTGGAGCTGCGGCGCCAGAAGGAGATGCAGCTCCTGCACCAC
CACCAGCAGCCGCCGCCGCACGTGGGCGCGGGCGGCGGCGGCGCCGCCGGAGGGCTGCTCCACGTGACGAGCCCGCTGCT
GTTCGACGGGCCGACGTCGTCGGCGCCGCTCTTCGCCGGCGCGGACGAATTCCTGATCCATAACCGCATAAGCCCGGACT
ACCGGCGCCAGGCTACCTAGGAAACTATTCATTAGCCCAGGAATAATTCAGCGATAAAAACAGCTAATTTTTTTTTTGTC
CTGCAAACCGCATTTTTGGTTACTCTTTATTTCTCAGCTTCTTAAGTTTCTTTTTTCTTTTTTTGAGATTTTTAGTGTTT
TTTCCCCCTTAGAAGCAGACTCTGAGGAGTTTCTTTCGTAGCACATTTTTTTTTCTTTTGAATTTTGTAATGCAGGACTC
TTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27307.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis