Browse Element(s) Details


Os.52818.1.S1_at

Description gb:AK069435.1
DB_XREF= gi:32979459
TID=Os.52818.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52818 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023024L22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023024L22, full insert sequence.
FL= gb:AK069435.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4435011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g44310Os.22280.1.S1_at10/115+25698593..25704536Vesicle-fusing ATPase, putative, expressed
LOC_Os05g44320Os.12402.1.S1_at11/115+25705605..25710316Periodic tryptophan protein 2 WD repeat associated domain containing protein, expressed
LOC_Os05g44320Os.12402.2.S1_x_at10/115+25705605..25710316Periodic tryptophan protein 2 WD repeat associated domain containing protein, expressed
LOC_Os05g44330Os.25529.1.S1_at11/115+25714400..25720009DJ-1 family protein, expressed
LOC_Os05g44330Os.53160.1.S1_at10/115+25714400..25720009DJ-1 family protein, expressed
LOC_Os05g44340Os.8971.1.S1_at11/115+25720401..25723954Heat shock protein 101, putative, expressed
LOC_Os05g44350Os.52818.1.S1_at11/115+25724424..25727740expressed protein
LOC_Os05g44360Os.26690.1.S2_a_at11/115+25728005..25733923Oligosaccharyl transferase STT3 subunit homolog, putative, expressed
LOC_Os05g44360Os.26690.1.S1_a_at11/115+25728005..25733923Oligosaccharyl transferase STT3 subunit homolog, putative, expressed
LOC_Os05g44370OsAffx.27305.1.S1_at10/115+25735041..25736085hypothetical protein
LOC_Os05g44380OsAffx.27306.1.S1_at11/115+25737777..25739599MPPN domain containing protein, expressed
LOC_Os05g44390Os.14123.1.S1_x_at11/115+25740498..25743595peptidyl-tRNA hydrolase 2, putative, expressed
LOC_Os05g44390Os.14123.2.S1_at9/115+25740498..25743595peptidyl-tRNA hydrolase 2, putative, expressed
LOC_Os05g44400OsAffx.27307.1.S1_at11/115+25749263..25751409GATA zinc finger family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52818.1.S1_at--853--2551Chr05:25726436..25726460 (25 bp)
AACTGCTCACTGTTGCTTTGGATGC
LOC_Os05g44350
Os.52818.1.S1_at--1025--611Chr05:25726457..25726481 (25 bp)
ATGCTGGCGCCGATGATGTCATTGA
LOC_Os05g44350
Os.52818.1.S1_at--987--1351Chr05:25726982..25727006 (25 bp)
AGAGAACTATCCTGTTGTGCTATCG
LOC_Os05g44350
Os.52818.1.S1_at--163--671Chr05:25727050..25727074 (25 bp)
ATGAATTGCTGCCTCTGAACCCGAT
LOC_Os05g44350
Os.52818.1.S1_at--279--3211Chr05:25727452..25727476 (25 bp)
CAAGGTCCTAGTGTCTAAGTTGCTT
LOC_Os05g44350
Os.52818.1.S1_at--960--5751Chr05:25727486..25727510 (25 bp)
GACGTTGATGCTGTCTATACTGACC
LOC_Os05g44350
Os.52818.1.S1_at--414--7771Chr05:25727514..25727538 (25 bp)
GGTGACTCTGAATTCATGATCCAAG
LOC_Os05g44350
Os.52818.1.S1_at--440--711Chr05:25727529..25727553 (25 bp)
ATGATCCAAGACACTCGATGCCGAC
LOC_Os05g44350
Os.52818.1.S1_at--375--6351Chr05:25727545..25727569 (25 bp)
GATGCCGACGGTTCTTGGGTTACAC
LOC_Os05g44350
Os.52818.1.S1_at--810--5891Chr05:25727608..25727632 (25 bp)
GAGCTGCCAATGGAGCCTGTTTACT
LOC_Os05g44350
Os.52818.1.S1_at--235--7451Chr05:25727683..25727707 (25 bp)
GTGTAACTACTTTGCACACTCGCAT
LOC_Os05g44350
Target Sequence 
AACTGCTCACTGTTGCTTTGGATGCTGGCGCCGATGATGTCATTGAACCAAATTTTGATGATGATGATGATGACGACGAC
GACTACGATGACGACTCCTCTGAAGATGTTTCAGAAAGGTTTTACAAGATAGTTACTACATCAGAGAACTATCCTGTTGT
GCTATCGAAGCTACAAGAGGAAGGACTAAAATTTGAAACTGATAATGGCTATGAATTGCTGCCTCTGAACCCGATTGAGG
TAGATGACGAGGCCATGGAACTAAACAAGGTCCTAGTGTCTAAGTTGCTTGAGCTTGATGACGTTGATGCTGTCTATACT
GACCAAAGGTGACTCTGAATTCATGATCCAAGACACTCGATGCCGACGGTTCTTGGGTTACACTGTGGATTGGCAGTGGA
TTGGCAGAAAGCTGGTGGATGGAGCTGCCAATGGAGCCTGTTTACTTGCAGCCAGTTATATTTTGCCAAAATTGAGTTGA
TAATACGGCATTTTTTGTGTAACTACTTTGCACACTCGCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52818.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis