Browse Element(s) Details


Os.12402.2.S1_x_at

Description gb:AK112075.1
DB_XREF= gi:37988738
TID=Os.12402.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12402 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-123-D01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-123-D01, full insert sequence.
FL= gb:AK112075.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4432010/11Periodic tryptophan protein 2 WD repeat associated domain containing protein, expressed
LOC_Os01g712701/11Eukaryotic peptide chain release factor subunit 1-2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g44280OsAffx.22608.3.S1_x_at4/115+25680411..25682326retrotransposon protein, putative, LINE subclass
LOC_Os05g44280OsAffx.22608.3.S1_at3/115+25680411..25682326retrotransposon protein, putative, LINE subclass
LOC_Os05g44290Os.12105.1.S1_a_at11/115+25688604..25692722protein kinase, putative, expressed
LOC_Os05g44300Os.27482.1.A1_at11/115+25693271..25695387uncharacterized plant-specific domain TIGR01615 family protein, expressed
LOC_Os05g44310Os.22280.1.S1_at10/115+25698593..25704536Vesicle-fusing ATPase, putative, expressed
LOC_Os05g44320Os.12402.1.S1_at11/115+25705605..25710316Periodic tryptophan protein 2 WD repeat associated domain containing protein, expressed
LOC_Os05g44320Os.12402.2.S1_x_at10/115+25705605..25710316Periodic tryptophan protein 2 WD repeat associated domain containing protein, expressed
LOC_Os05g44330Os.25529.1.S1_at11/115+25714400..25720009DJ-1 family protein, expressed
LOC_Os05g44330Os.53160.1.S1_at10/115+25714400..25720009DJ-1 family protein, expressed
LOC_Os05g44340Os.8971.1.S1_at11/115+25720401..25723954Heat shock protein 101, putative, expressed
LOC_Os05g44350Os.52818.1.S1_at11/115+25724424..25727740expressed protein
LOC_Os05g44360Os.26690.1.S2_a_at11/115+25728005..25733923Oligosaccharyl transferase STT3 subunit homolog, putative, expressed
LOC_Os05g44360Os.26690.1.S1_a_at11/115+25728005..25733923Oligosaccharyl transferase STT3 subunit homolog, putative, expressed
LOC_Os05g44370OsAffx.27305.1.S1_at10/115+25735041..25736085hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006415biological_processtranslational termination
GO:0005834cellular_componentheterotrimeric G-protein complex
GO:0018444cellular_componenttranslation release factor complex
GO:0000166molecular_functionnucleotide binding
GO:0003747molecular_functiontranslation release factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12402.2.S1_x_at--1054--9072Chr01:41569531..41569766 (25 bp)
TGCTATTTTGGCTTCATCATCATGG
LOC_Os01g71270
Os.12402.2.S1_x_at--784--2111Chr05:25707815..25707839 (25 bp)
ACAGTTCGCCTTTGGGACGTATTTG
LOC_Os05g44320
Os.12402.2.S1_x_at--1060--6271Chr05:25707752..25707776 (25 bp)
GATGTTCTTACTTTGGCTTATCGCC
LOC_Os05g44320
Os.12402.2.S1_x_at--1031--8471Chr05:25707739..25707763 (25 bp)
TGGCTTATCGCCCTGATGGAAGACA
LOC_Os05g44320
Os.12402.2.S1_x_at--865--8631Chr05:25707677..25707701 (25 bp)
TGGGATCCATTTGACGGCCTGTTGA
LOC_Os05g44320
Os.12402.2.S1_x_at--1007--8671Chr05:25707553..25707577 (25 bp)
TGTGCTATTCTGCTGACGGGACTTA
LOC_Os05g44320
Os.12402.2.S1_x_at--711--2491Chr05:25707006..25707027 (22 bp)
AACAGGTGCTCTTGCGTAGATTCCA
LOC_Os05g44320
Os.12402.2.S1_x_at--547--5191Chr05:25706973..25706997 (25 bp)
GCAATCTCTCGTTGGACGGAGTACT
LOC_Os05g44320
Os.12402.2.S1_x_at--165--3912Chr10:3442793..3442816 (23 bp)
CTGGTGTACTTTTCCTTGTTGGATC
NONE
Os.12402.2.S1_x_at--346--5591Chr05:25705663..25705687 (25 bp)
GAAATTTTGTCACCCAGTTTTGTTG
LOC_Os05g44320
Os.12402.2.S1_x_at--1003--7011Chr05:25705597..25705621 (25 bp)
GTACTTGTGGGTTTCCTAATGCATC
NONE
Target Sequence 
TGCTATTTTGGCTTCATCATCATGGGACAAAACAGTTCGCCTTTGGGACGTATTTGAGAGCAAGGGTGCAGTGGAAACTT
TTCAACATTCACATGATGTTCTTACTTTGGCTTATCGCCCTGATGGAAGACAGATAGCATGCAGCACACTAGATGGCTTA
ATCCATTTCTGGGATCCATTTGACGGCCTGTTGATGTATACAATTGAAGGCCGCAGGGATATTGCCGGGGGTCGTCTCAT
GACTGACAGAAGATCTGCTGCTAATACAAGTATAGGAAAGTACTTCACAACGTTGTGCTATTCTGCTGACGGGACTTATA
TTTTAGCTGGAGGAAACAGCAAATATATATGCATGTATGATGTTGGAGAACAGGTGCTCTTGCGTAGATTCCAGATCACC
CGCAATCTCTCGTTGGACGGAGTACTTGATTTTCTGAACTCAAAGAAGATGACGGATGCTGGTGTACTTTTCCTTGTTGG
ATCTTGGATGATGTGTGTACACACCTTACTGAAATTTTGTCACCCAGTTTTGTTGAAACGATCCAGAAAGAATATATCAT
GCATCACAAGTATGGAGTACTTGTGGGTTTCCTAATGCATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12402.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis