Browse Element(s) Details


Os.12105.1.S1_a_at

Description gb:AK068419.1
DB_XREF= gi:32978437
TID=Os.12105.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12105 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023098L24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013153L22, full insert sequence.
FL= gb:AK068419.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4429011/11protein kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g44260NANA5+25665364..25665916expressed protein
LOC_Os05g44270OsAffx.4611.1.S1_s_at11/115+25677229..25678236VQ motif family protein, expressed
LOC_Os05g44280OsAffx.22608.3.S1_x_at4/115+25680411..25682326retrotransposon protein, putative, LINE subclass
LOC_Os05g44280OsAffx.22608.3.S1_at3/115+25680411..25682326retrotransposon protein, putative, LINE subclass
LOC_Os05g44290Os.12105.1.S1_a_at11/115+25688604..25692722protein kinase, putative, expressed
LOC_Os05g44300Os.27482.1.A1_at11/115+25693271..25695387uncharacterized plant-specific domain TIGR01615 family protein, expressed
LOC_Os05g44310Os.22280.1.S1_at10/115+25698593..25704536Vesicle-fusing ATPase, putative, expressed
LOC_Os05g44320Os.12402.1.S1_at11/115+25705605..25710316Periodic tryptophan protein 2 WD repeat associated domain containing protein, expressed
LOC_Os05g44320Os.12402.2.S1_x_at10/115+25705605..25710316Periodic tryptophan protein 2 WD repeat associated domain containing protein, expressed
LOC_Os05g44330Os.25529.1.S1_at11/115+25714400..25720009DJ-1 family protein, expressed
LOC_Os05g44330Os.53160.1.S1_at10/115+25714400..25720009DJ-1 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12105.1.S1_a_at--856--10431Chr05:25691661..25691685 (25 bp)
TTAGTGGCTCGATCCCTTATGAAGA
LOC_Os05g44290
Os.12105.1.S1_a_at--479--6031Chr05:25691684..25691708 (25 bp)
GAGATGACTCCATTGCAGGCAGCTT
LOC_Os05g44290
Os.12105.1.S1_a_at--649--5011Chr05:25691698..25691722 (25 bp)
GCAGGCAGCTTTTGCAGTTGTTAAT
LOC_Os05g44290
Os.12105.1.S1_a_at--694--2771Chr05:25692262..25692286 (25 bp)
AAGACCAGTTGTTCCTTCAAGCTGT
LOC_Os05g44290
Os.12105.1.S1_a_at--613--3931Chr05:25692288..25692312 (25 bp)
CGGCGCAACTTCGACTTTTGATCGA
LOC_Os05g44290
Os.12105.1.S1_a_at--666--6391Chr05:25692307..25692331 (25 bp)
GATCGAGCAATGTTGGTCTTGTCAA
LOC_Os05g44290
Os.12105.1.S1_a_at--863--2731Chr05:25692338..25692362 (25 bp)
AAGAGACCTGAGTTTTCCCAAGTAG
LOC_Os05g44290
Os.12105.1.S1_a_at--446--10651Chr05:25692352..25692376 (25 bp)
TTCCCAAGTAGTTCAGATCCTCAAA
LOC_Os05g44290
Os.12105.1.S1_a_at--710--10751Chr05:25692411..25692435 (25 bp)
TTGACAAGATCCCAAGCACCAACTG
LOC_Os05g44290
Os.12105.1.S1_a_at--1069--2751Chr05:25692484..25692508 (25 bp)
AAGACTCTCGTACAGTCAGGCCGAT
LOC_Os05g44290
Os.12105.1.S1_a_at--684--7071Chr05:25692538..25692562 (25 bp)
GTAATTATATGCATTCCTCTCTTCC
LOC_Os05g44290
Target Sequence 
TTAGTGGCTCGATCCCTTATGAAGAGATGACTCCATTGCAGGCAGCTTTTGCAGTTGTTAATAAGAACTTAAGACCAGTT
GTTCCTTCAAGCTGTCCGGCGCAACTTCGACTTTTGATCGAGCAATGTTGGTCTTGTCAACCAGAGAAGAGACCTGAGTT
TTCCCAAGTAGTTCAGATCCTCAAAAATCTCAAGGAGGCCCTGGATAGAGATGGAACGCTTGACAAGATCCCAAGCACCA
ACTGCCAGGAACCTCCTGATCAGAACAAGAAGAGANTGTCCAATTGGATCCAAAGACTCTCGTACAGTCAGGCCGATTTC
TCCGGACCTCCACCGCCAAAGTTATTGTAATTATATGCATTCCTCTCTTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12105.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis