Browse Element(s) Details


Os.53160.1.S1_at

Description gb:AK071101.1
DB_XREF= gi:32981124
TID=Os.53160.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53160 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023077J08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023077J08, full insert sequence.
FL= gb:AK071101.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4433010/11DJ-1 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g44290Os.12105.1.S1_a_at11/115+25688604..25692722protein kinase, putative, expressed
LOC_Os05g44300Os.27482.1.A1_at11/115+25693271..25695387uncharacterized plant-specific domain TIGR01615 family protein, expressed
LOC_Os05g44310Os.22280.1.S1_at10/115+25698593..25704536Vesicle-fusing ATPase, putative, expressed
LOC_Os05g44320Os.12402.1.S1_at11/115+25705605..25710316Periodic tryptophan protein 2 WD repeat associated domain containing protein, expressed
LOC_Os05g44320Os.12402.2.S1_x_at10/115+25705605..25710316Periodic tryptophan protein 2 WD repeat associated domain containing protein, expressed
LOC_Os05g44330Os.25529.1.S1_at11/115+25714400..25720009DJ-1 family protein, expressed
LOC_Os05g44330Os.53160.1.S1_at10/115+25714400..25720009DJ-1 family protein, expressed
LOC_Os05g44340Os.8971.1.S1_at11/115+25720401..25723954Heat shock protein 101, putative, expressed
LOC_Os05g44350Os.52818.1.S1_at11/115+25724424..25727740expressed protein
LOC_Os05g44360Os.26690.1.S2_a_at11/115+25728005..25733923Oligosaccharyl transferase STT3 subunit homolog, putative, expressed
LOC_Os05g44360Os.26690.1.S1_a_at11/115+25728005..25733923Oligosaccharyl transferase STT3 subunit homolog, putative, expressed
LOC_Os05g44370OsAffx.27305.1.S1_at10/115+25735041..25736085hypothetical protein
LOC_Os05g44380OsAffx.27306.1.S1_at11/115+25737777..25739599MPPN domain containing protein, expressed
LOC_Os05g44390Os.14123.1.S1_x_at11/115+25740498..25743595peptidyl-tRNA hydrolase 2, putative, expressed
LOC_Os05g44390Os.14123.2.S1_at9/115+25740498..25743595peptidyl-tRNA hydrolase 2, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009228biological_processthiamin biosynthesis
GO:0003824molecular_functioncatalytic activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53160.1.S1_at--636--8491NONE
TGGCTCTCCCGTTGACAAAGGTTGA
NONE
Os.53160.1.S1_at--23--3131Chr05:25717288..25717312 (25 bp)
AATTATCCTTCCTGTGAGCTATTTC
LOC_Os05g44330
Os.53160.1.S1_at--1162--9251Chr05:25717297..25717321 (25 bp)
TCCTGTGAGCTATTTCTCATTTCAT
LOC_Os05g44330
Os.53160.1.S1_at--1044--591Chr05:25717343..25717367 (25 bp)
ATGCCGACATATAAGTTCATTGTTG
LOC_Os05g44330
Os.53160.1.S1_at--25--1231Chr05:25717356..25717380 (25 bp)
AGTTCATTGTTGTTCCTACAAGATA
LOC_Os05g44330
Os.53160.1.S1_at--1023--4951Chr05:25717385..25717409 (25 bp)
GCATATAGCTGGTTCATGGACTGGT
LOC_Os05g44330
Os.53160.1.S1_at--34--8531Chr05:25717401..25717425 (25 bp)
TGGACTGGTACAAATCCCCATCTTA
LOC_Os05g44330
Os.53160.1.S1_at--792--7031Chr05:25717408..25717432 (25 bp)
GTACAAATCCCCATCTTATCATCAT
LOC_Os05g44330
Os.53160.1.S1_at--1077--3551Chr05:25717427..25717451 (25 bp)
CATCATCATGATGCTTGCTTTTAAC
LOC_Os05g44330
Os.53160.1.S1_at--809--631Chr05:25717437..25717461 (25 bp)
ATGCTTGCTTTTAACCTTATCTTGA
LOC_Os05g44330
Os.53160.1.S1_at--963--2631Chr05:25717449..25717473 (25 bp)
AACCTTATCTTGAATGTAGCTGCAT
LOC_Os05g44330
Target Sequence 
TGGCTCTCCCGTTGACAAAGGTTGACGATAATCTTGAAAGAAGTATTGAAGTCAACGAAATTGAGTGGTCTTCTGATCAC
AATCCTCATGTTCTCATTCCAATTGCAAATGGTTCAGAAGAGATGGAGATAATAATGTTGACGGATGTTTTACGGCGAGC
AAATGTAAATGTGGTGTTGGCATCAGTTGAAAAATCAACAAGTATTGTCGGGTCCCAAAGGATGAGGATTGTTGCTGATA
AATGCATTTCAGATGCTTCTGCCTTAGAATATGATCTAATTATCCTTCCTGTGAGCTATTTCTCATTTCATATTTTCATT
TAGATATCATAAATGCCGACATATAAGTTCATTGTTGTTCCTACAAGATATTTTGCATATAGCTGGTTCATGGACTGGTA
CAAATCCCCATCTTATCATCATCATGATGCTTGCTTTTAACCTTATCTTGAATGTAGCTGCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53160.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis