Browse Element(s) Details


Os.14123.1.S1_x_at

Description gb:AK099433.1
DB_XREF= gi:32984642
TID=Os.14123.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.14123 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013014G15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013014G15, full insert sequence.
FL= gb:AK099433.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4439011/11peptidyl-tRNA hydrolase 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g44330Os.25529.1.S1_at11/115+25714400..25720009DJ-1 family protein, expressed
LOC_Os05g44330Os.53160.1.S1_at10/115+25714400..25720009DJ-1 family protein, expressed
LOC_Os05g44340Os.8971.1.S1_at11/115+25720401..25723954Heat shock protein 101, putative, expressed
LOC_Os05g44350Os.52818.1.S1_at11/115+25724424..25727740expressed protein
LOC_Os05g44360Os.26690.1.S2_a_at11/115+25728005..25733923Oligosaccharyl transferase STT3 subunit homolog, putative, expressed
LOC_Os05g44360Os.26690.1.S1_a_at11/115+25728005..25733923Oligosaccharyl transferase STT3 subunit homolog, putative, expressed
LOC_Os05g44370OsAffx.27305.1.S1_at10/115+25735041..25736085hypothetical protein
LOC_Os05g44380OsAffx.27306.1.S1_at11/115+25737777..25739599MPPN domain containing protein, expressed
LOC_Os05g44390Os.14123.1.S1_x_at11/115+25740498..25743595peptidyl-tRNA hydrolase 2, putative, expressed
LOC_Os05g44390Os.14123.2.S1_at9/115+25740498..25743595peptidyl-tRNA hydrolase 2, putative, expressed
LOC_Os05g44400OsAffx.27307.1.S1_at11/115+25749263..25751409GATA zinc finger family protein, expressed
LOC_Os05g44410NANA5+25763136..25764371hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14123.1.S1_x_at--627--5651Chr05:25741066..25741321 (25 bp)
GACATGACACACTGATTCCTTCAAA
LOC_Os05g44390
Os.14123.1.S1_x_at--383--7851Chr05:25741008..25741032 (25 bp)
GGTATCTTATGCTTGTAGTCCCACA
LOC_Os05g44390
Os.14123.1.S1_x_at--643--6931Chr05:25740851..25740875 (25 bp)
GTAGTCTACCCACATGTTAGCGCAT
LOC_Os05g44390
Os.14123.1.S1_x_at--8--6791Chr05:25740836..25740860 (25 bp)
GTTAGCGCATTCCAGCGAGTGGATT
LOC_Os05g44390
Os.14123.1.S1_x_at--91--10091Chr05:25740769..25740793 (25 bp)
TAGGTTATCACCTTCCTCAAAGTAA
LOC_Os05g44390
Os.14123.1.S1_x_at--1085--5671Chr05:25740695..25740719 (25 bp)
GACTTGTCTTGTCAAACATCCTTGG
LOC_Os05g44390
Os.14123.1.S1_x_at--763--2491Chr05:25740681..25740705 (25 bp)
AACATCCTTGGTGTGAAGCCTCTTG
LOC_Os05g44390
Os.14123.1.S1_x_at--613--2651Chr05:25740666..25740690 (25 bp)
AAGCCTCTTGCTGTGAAAGTTCTGT
LOC_Os05g44390
Os.14123.1.S1_x_at--741--2811Chr05:25740635..25740659 (25 bp)
AAGTTCCCAACTAGTCCATATCTAC
LOC_Os05g44390
Os.14123.1.S1_x_at--638--7611Chr05:25740609..25740633 (25 bp)
GGGAATTGAATCTCTTTCTTGCAGA
LOC_Os05g44390
Os.14123.1.S1_x_at--1088--3411Chr05:25740588..25740612 (25 bp)
CAGAGCTGGAACTTTGTGCACTAGT
LOC_Os05g44390
Target Sequence 
GACATGACACACTGATTCCTTCAAAGATTCAAACCAATTGTCGGGTTCAGTTGACGGTGGTATCTTATGCTTGTAGTCCC
ACAACAGGAGGTCAGAATCCTTGGGATGCTTTANCCAGTTCTCAGGCTAACTCTGAANGCAATTCTTCAAGATCCAGTTC
TAGAGTGGNTGATTCAAAATTGNCGNTGGNTGTAATCTTTTNCTCCANATGTNANTGTAGTCTACCCACATGTTAGCGCA
TTCCAGCGAGTGGATTTTACTTTGGGACNATGAACNAGTATCTGTAGTTTCGAAGTAGTAGGTTATCACCTTCCTCAAAG
TAACGGATCATATGTACCGTATGTCCANGAGGAAGCACNAAATGCGTAGAGGTGACTTGTCTTGTCAAACATCCTTGGTG
TGAAGCCTCTTGCTGTGAAAGTTCTGTATTCCCAAGTTCCCAACTAGTCCATATCTACTGGGAATTGAATCTCTTTCTTG
CAGAGCTGGAACTTTGTGCACTAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14123.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis