Browse Element(s) Details


Os.26690.1.S2_a_at

Description gb:AK067224.1
DB_XREF= gi:32977242
TID=Os.26690.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.26690 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033024C12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013099L06, full insert sequence.
FL= gb:AK067224.1 gb:AK070919.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4436011/11Oligosaccharyl transferase STT3 subunit homolog, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g44310Os.22280.1.S1_at10/115+25698593..25704536Vesicle-fusing ATPase, putative, expressed
LOC_Os05g44320Os.12402.1.S1_at11/115+25705605..25710316Periodic tryptophan protein 2 WD repeat associated domain containing protein, expressed
LOC_Os05g44320Os.12402.2.S1_x_at10/115+25705605..25710316Periodic tryptophan protein 2 WD repeat associated domain containing protein, expressed
LOC_Os05g44330Os.25529.1.S1_at11/115+25714400..25720009DJ-1 family protein, expressed
LOC_Os05g44330Os.53160.1.S1_at10/115+25714400..25720009DJ-1 family protein, expressed
LOC_Os05g44340Os.8971.1.S1_at11/115+25720401..25723954Heat shock protein 101, putative, expressed
LOC_Os05g44350Os.52818.1.S1_at11/115+25724424..25727740expressed protein
LOC_Os05g44360Os.26690.1.S2_a_at11/115+25728005..25733923Oligosaccharyl transferase STT3 subunit homolog, putative, expressed
LOC_Os05g44360Os.26690.1.S1_a_at11/115+25728005..25733923Oligosaccharyl transferase STT3 subunit homolog, putative, expressed
LOC_Os05g44370OsAffx.27305.1.S1_at10/115+25735041..25736085hypothetical protein
LOC_Os05g44380OsAffx.27306.1.S1_at11/115+25737777..25739599MPPN domain containing protein, expressed
LOC_Os05g44390Os.14123.1.S1_x_at11/115+25740498..25743595peptidyl-tRNA hydrolase 2, putative, expressed
LOC_Os05g44390Os.14123.2.S1_at9/115+25740498..25743595peptidyl-tRNA hydrolase 2, putative, expressed
LOC_Os05g44400OsAffx.27307.1.S1_at11/115+25749263..25751409GATA zinc finger family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004576molecular_functionoligosaccharyl transferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26690.1.S2_a_at--206--3171Chr05:25728856..25728880 (25 bp)
AATTGCCTCATGTACAAGCTTTGCT
LOC_Os05g44360
Os.26690.1.S2_a_at--164--8611Chr05:25728552..25728680 (25 bp)
TGAGGAGGTTTTCACAACCCACCAC
LOC_Os05g44360
Os.26690.1.S2_a_at--350--2611Chr05:25728537..25728561 (25 bp)
AACCCACCACTGGATGGTCCGTATA
LOC_Os05g44360
Os.26690.1.S2_a_at--200--5591Chr05:25728370..25728486 (25 bp)
GAAATCTGGCTCCAAAGCTAGCTCA
LOC_Os05g44360
Os.26690.1.S2_a_at--1032--9991Chr05:25728352..25728376 (25 bp)
TAGCTCAACGAATGCGGCGGGCCGA
LOC_Os05g44360
Os.26690.1.S2_a_at--170--8491Chr05:25728281..25728305 (25 bp)
TGGCTGCTTGGAATTTGCTTTTGCT
LOC_Os05g44360
Os.26690.1.S2_a_at--372--6051Chr05:25728203..25728227 (25 bp)
GAGATTGCTGCGTTATTGCACTCAG
LOC_Os05g44360
Os.26690.1.S2_a_at--126--10751Chr05:25728188..25728212 (25 bp)
TTGCACTCAGTATTTGACACCCCTA
LOC_Os05g44360
Os.26690.1.S2_a_at--527--10031Chr05:25728121..25728145 (25 bp)
TAGACTGCTCTAAGCTTTTTGGCCC
LOC_Os05g44360
Os.26690.1.S2_a_at--855--5131Chr05:25728088..25728112 (25 bp)
GCAACACGCGGTTTAGTGTCTTTTA
LOC_Os05g44360
Os.26690.1.S2_a_at--1155--7131Chr05:25728071..25728095 (25 bp)
GTCTTTTATACTCCTTTTGCACTGA
LOC_Os05g44360
Target Sequence 
AATTGCCTCATGTACAAGCTTTGCTATTACAGGTTCGTTGAGACCGATGGCAAAGGTTTTGATAGAGTAAGAGGATATGA
AATAGGAAAGAAGCATTTCAAACTAACACATTTTGAGGAGGTTTTCACAACCCACCACTGGATGGTCCGTATATATAAAC
TGAAACCTCAAAAGAATAGGGTTCGGGGCAAGTTGAAGAAGTTGAAATCTGGCTCCAAAGCTAGCTCAACGAATGCGGCG
GGCCGAAAGAAGAACCCATGGCAATAAAAATGAGTAAATGCGAAAAGCGACGTGGCTGCTTGGAATTTGCTTTTGCTAGC
TCAACTGCAACTAAGCTCAAAAGAACTAGAAAACCACAGGCCTAGGATTAGAGATTGCTGCGTTATTGCACTCAGTATTT
GACACCCCTAATATGTTTTTGGGACCAGCAGGAGTGCTGAAGAAATTTTTGATAGACTGCTCTAAGCTTTTTGGCCCCAT
TGTTTGCAACACGCGGTTTAGTGTCTTTTATACTCCTTTTGCACTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26690.1.S2_a_at     

Putative homologies in rice

Putative homologies in arabidopsis