Browse Element(s) Details


OsAffx.4611.1.S1_s_at

Description tigr:9633.m04131
TID=OsAffx.4611.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=VQ motif, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4427011/11VQ motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g44240Os.46306.1.S1_x_at2/115+25650059..25652464transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g44250NANA5+25659150..25661575transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g44260NANA5+25665364..25665916expressed protein
LOC_Os05g44270OsAffx.4611.1.S1_s_at11/115+25677229..25678236VQ motif family protein, expressed
LOC_Os05g44280OsAffx.22608.3.S1_x_at4/115+25680411..25682326retrotransposon protein, putative, LINE subclass
LOC_Os05g44280OsAffx.22608.3.S1_at3/115+25680411..25682326retrotransposon protein, putative, LINE subclass
LOC_Os05g44290Os.12105.1.S1_a_at11/115+25688604..25692722protein kinase, putative, expressed
LOC_Os05g44300Os.27482.1.A1_at11/115+25693271..25695387uncharacterized plant-specific domain TIGR01615 family protein, expressed
LOC_Os05g44310Os.22280.1.S1_at10/115+25698593..25704536Vesicle-fusing ATPase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4611.1.S1_s_at--166--4011Chr05:25678043..25678067 (25 bp)
CGTCGCGCTGCTTAGATTATTTATG
LOC_Os05g44270
OsAffx.4611.1.S1_s_at--569--4571Chr05:25678047..25678071 (25 bp)
GCGCTGCTTAGATTATTTATGATAT
LOC_Os05g44270
OsAffx.4611.1.S1_s_at--859--10411Chr05:25678059..25678083 (25 bp)
TTATTTATGATATGAGCACTGCTCG
LOC_Os05g44270
OsAffx.4611.1.S1_s_at--437--1191Chr05:25678086..25678110 (25 bp)
AGTATGTACTGTTCGTACTCGTTCT
LOC_Os05g44270
OsAffx.4611.1.S1_s_at--1159--10111Chr05:25678088..25678112 (25 bp)
TATGTACTGTTCGTACTCGTTCTTG
LOC_Os05g44270
OsAffx.4611.1.S1_s_at--43--9911Chr05:25678092..25678116 (25 bp)
TACTGTTCGTACTCGTTCTTGGTGC
LOC_Os05g44270
OsAffx.4611.1.S1_s_at--875--6711Chr05:25678096..25678120 (25 bp)
GTTCGTACTCGTTCTTGGTGCTTAA
LOC_Os05g44270
OsAffx.4611.1.S1_s_at--952--9391Chr05:25678098..25678122 (25 bp)
TCGTACTCGTTCTTGGTGCTTAATT
LOC_Os05g44270
OsAffx.4611.1.S1_s_at--691--9911Chr05:25678101..25678125 (25 bp)
TACTCGTTCTTGGTGCTTAATTGCT
LOC_Os05g44270
OsAffx.4611.1.S1_s_at--932--4031Chr05:25678105..25678129 (25 bp)
CGTTCTTGGTGCTTAATTGCTGTAA
LOC_Os05g44270
OsAffx.4611.1.S1_s_at--923--3611Chr05:25678109..25678133 (25 bp)
CTTGGTGCTTAATTGCTGTAATTTT
LOC_Os05g44270
Target Sequence 
CGTCGCGCTGCTTAGATTATTTATGATATGAGCACTGCTCGGCAGTATGTACTGTTCGTACTCGTTCTTGGTGCTTAATT
GCTGTAATTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4611.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis