Browse Element(s) Details


Os.52491.1.A1_at

Description gb:AK067487.1
DB_XREF= gi:32977505
TID=Os.52491.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52491 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013107G24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013107G24, full insert sequence.
FL= gb:AK067487.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4442011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g44400OsAffx.27307.1.S1_at11/115+25749263..25751409GATA zinc finger family protein, expressed
LOC_Os05g44410NANA5+25763136..25764371hypothetical protein
LOC_Os05g44420Os.52491.1.A1_at11/115+25771082..25772335expressed protein
LOC_Os05g44430OsAffx.15100.1.S1_at11/115+25774170..25775874hypothetical protein
LOC_Os05g44440OsAffx.8939.1.S1_x_at6/115+25778494..25779154hypothetical protein
LOC_Os05g44440OsAffx.8939.1.S1_at3/115+25778494..25779154hypothetical protein
LOC_Os05g44450OsAffx.8939.1.S1_at2/115+25785052..25786815transposon protein, putative, unclassified
LOC_Os05g44450OsAffx.2606.1.S1_at2/115+25785052..25786815transposon protein, putative, unclassified
LOC_Os05g44450OsAffx.8939.1.S1_x_at1/115+25785052..25786815transposon protein, putative, unclassified
LOC_Os05g44450OsAffx.1436.1.S1_x_at1/115+25785052..25786815transposon protein, putative, unclassified
LOC_Os05g44450Os.10731.2.A1_at1/115+25785052..25786815transposon protein, putative, unclassified
LOC_Os05g44460NANA5+25794514..25797153retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52491.1.A1_at--874--1911Chr05:25771773..25771797 (25 bp)
ACGGGCAGTGGCACGACCGTTCGTC
LOC_Os05g44420
Os.52491.1.A1_at--716--411Chr05:25772057..25772081 (25 bp)
ATCATGTGGTTCCACGAGCAGCTGC
LOC_Os05g44420
Os.52491.1.A1_at--387--4391Chr05:25772117..25772141 (25 bp)
GCCAAGGAGCGGAGCACCTACTACT
LOC_Os05g44420
Os.52491.1.A1_at--71--1491Chr05:25772129..25772153 (25 bp)
AGCACCTACTACTTCGTTAGATAGT
LOC_Os05g44420
Os.52491.1.A1_at--38--9331Chr05:25772142..25772166 (25 bp)
TCGTTAGATAGTCAGTACGGATCAG
LOC_Os05g44420
Os.52491.1.A1_at--514--9931Chr05:25772157..25772181 (25 bp)
TACGGATCAGTACGGCACCATGTGA
LOC_Os05g44420
Os.52491.1.A1_at--992--6991Chr05:25772166..25772190 (25 bp)
GTACGGCACCATGTGAATAGTTCAT
LOC_Os05g44420
Os.52491.1.A1_at--924--1831Chr05:25772193..25772217 (25 bp)
ACGCATGGATTATTGCAGAGTACAT
LOC_Os05g44420
Os.52491.1.A1_at--703--5511Chr05:25772228..25772252 (25 bp)
GAAAATTGTGCGCATGCTTCAAGTT
LOC_Os05g44420
Os.52491.1.A1_at--805--631Chr05:25772241..25772265 (25 bp)
ATGCTTCAAGTTTTTCTCTTTCCTG
LOC_Os05g44420
Os.52491.1.A1_at--194--3771Chr05:25772256..25772280 (25 bp)
CTCTTTCCTGTTAATTCTTGATACG
LOC_Os05g44420
Target Sequence 
ACGGGCAGTGGCACGACCGTTCGTCCGCCGCGGATCCGTACGGCTCGNCCGCCACGGTGTCGAGGCTGTTCGAGCTGATG
GACGTGAAGGAGGAGNCCGCCGCCGAGGCGATGACGACGGATATCGACGACGAAGACGGCGACGTGGTCGCGTGGCCCGC
GGTGGTGGTGCCGGCGCCGCGGCAGGTGCGGATCACGGACTCGCCGTTCCCGGCGTGGGAGGCGGACGGCGACGACGACG
AAGAGGGGAGGCTCGGCGTGGTGGACCGCCGCGCCGACGAGTTCATCATGTGGTTCCACGAGCAGCTGCGCATGCAGCAG
CAGCAGCGCGCCGCCGCCGCCGCCGCCAAGGAGCGGAGCACCTACTACTTCGTTAGATAGTCAGTACGGATCAGTACGGC
ACCATGTGAATAGTTCATGAACGCATGGATTATTGCAGAGTACATACATAGAGANGAAAATTGTGCGCATGCTTCAAGTT
TTTCTCTTTCCTGTTAATTCTTGATACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52491.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis