Browse Element(s) Details


Os.10731.2.A1_at

Description gb:BI305686
DB_XREF= gi:14981008
DB_XREF=NL_1_G11
CLONE=NL_1_G11
TID=Os.10731.2
CNT=8
FEA=EST
TIER=Stack
STK=7
UG=Os.10731 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-118-G10, full insert sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g235903/11transposon protein, putative, unclassified
LOC_Os08g119103/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g128603/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g122003/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g239303/11retrotransposon protein, putative, unclassified
LOC_Os09g097603/11retrotransposon protein, putative, unclassified
LOC_Os12g235203/11retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os10g064402/11transposon protein, putative, unclassified
LOC_Os06g314202/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g138902/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g294702/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g143502/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g138102/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g034202/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g361802/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g119402/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g260142/11Terpene synthase, N-terminal domain containing protein, expressed
LOC_Os06g193202/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g177202/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g167102/11retrotransposon protein, putative, unclassified
LOC_Os08g145402/11retrotransposon protein, putative, unclassified
LOC_Os09g240602/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g238202/11transposon protein, putative, unclassified
LOC_Os10g169202/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g127002/11retrotransposon protein, putative, unclassified
LOC_Os10g173502/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g168402/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g231901/11transposon protein, putative, Mutator sub-class
LOC_Os03g354401/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g198601/11transposon protein, putative, unclassified
LOC_Os12g110001/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g185401/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g185001/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g337391/11retrotransposon protein, putative, unclassified
LOC_Os04g212201/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g320401/11transposon protein, putative, unclassified
LOC_Os05g444501/11transposon protein, putative, unclassified
LOC_Os12g238801/11transposon protein, putative, Mutator sub-class
LOC_Os11g185101/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g032801/11transposon protein, putative, unclassified
LOC_Os01g310201/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g235701/11hypothetical protein
LOC_Os09g099701/11retrotransposon protein, putative, unclassified
LOC_Os04g172501/11retrotransposon protein, putative, unclassified
LOC_Os09g131701/11transposon protein, putative, unclassified
LOC_Os10g064601/11retrotransposon protein, putative, unclassified
LOC_Os05g231501/11retrotransposon protein, putative, unclassified
LOC_Os05g201901/11transposon protein, putative, unclassified
LOC_Os01g232101/11retrotransposon protein, putative, unclassified
LOC_Os06g337591/11retrotransposon protein, putative, unclassified
LOC_Os12g172601/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g256701/11hypothetical protein
LOC_Os02g224901/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g170701/11retrotransposon protein, putative, unclassified
LOC_Os05g195201/11retrotransposon protein, putative, unclassified
LOC_Os08g162901/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g599201/11transposon protein, putative, unclassified
LOC_Os03g330601/11transposon protein, putative, unclassified
LOC_Os09g035301/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g320901/11retrotransposon protein, putative, unclassified
LOC_Os02g207401/11transposon protein, putative, unclassified
LOC_Os06g177401/11transposon protein, putative, unclassified
LOC_Os03g238701/11retrotransposon protein, putative, unclassified
LOC_Os05g083001/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g280001/11retrotransposon protein, putative, unclassified
LOC_Os05g183701/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g23570OsAffx.31849.1.S1_at11/1112+13343081..13345085hypothetical protein
LOC_Os12g23570OsAffx.26050.3.A1_at1/1112+13343081..13345085hypothetical protein
LOC_Os12g23580NANA12+13358140..13364886retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g23590Os.47114.1.S1_x_at4/1112+13365582..13369632transposon protein, putative, unclassified
LOC_Os12g23590Os.10731.2.A1_at3/1112+13365582..13369632transposon protein, putative, unclassified
LOC_Os12g23590OsAffx.19676.1.S1_at3/1112+13365582..13369632transposon protein, putative, unclassified
LOC_Os12g23590OsAffx.7600.1.S1_s_at1/1112+13365582..13369632transposon protein, putative, unclassified
LOC_Os12g23600NANA12+13375015..13375750hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0016106biological_processsesquiterpenoid biosynthesis
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10731.2.A1_at--942--8851NONE
TGATGATTAATTGCCCTACTGTTTT
NONE
Os.10731.2.A1_at--272--45536Chr12:7968344..7968365 (22 bp)
GCCCTACTGTTTTACAATTCTCAAA
NONE
Os.10731.2.A1_at--316--1672Chr12:8035166..8035190 (25 bp)
AGCCCTATATTATACCATTCTTTGG
NONE
Os.10731.2.A1_at--237--6911NONE
GTATCCTTGTGGCACGAGGGCGAAG
NONE
Os.10731.2.A1_at--1006--4754Chr04:10264645..10265025 (25 bp)
GCTGCAGTTTTCTTCATGACGCTGC
NONE
Os.10731.2.A1_at--1132--10371NONE
TTTTCTTCATGACGCTGCAGCTTCG
NONE
Os.10731.2.A1_at--446--5371NONE
GAAGACCTCTTCTGAGCTTGAGAAA
NONE
Os.10731.2.A1_at--1159--325227Chr12:6899383..6899407 (25 bp)
CACACCCACAAATGCAGAATAAATG
NONE
Os.10731.2.A1_at--658--221145Chr12:8985837..8985861 (25 bp)
AAATGCAAGGGAGTACAAGGGAGTT
NONE
Os.10731.2.A1_at--476--1358Chr12:4279364..4279388 (25 bp)
AGGGTTAGGGTTGCAGTAAACAGCA
NONE
Os.10731.2.A1_at--1052--983132Chr12:11602210..11602234 (25 bp)
TAAAGACATTTAGTTGCTCAAAGCT
NONE
Target Sequence 
TGATGATTAATTGCCCTACTGTTTTACAATTCTCAAAAGTTTGCTAAATGCTGCTTTTGCAAATAAGCCCTATATTATAC
CATTCTTTGGTATCCTTGTGGCACGAGGGCGAAGGTTCGTGAGTGCGTCGGAAGTGATCAAGAAGATTAATTGAAGACCG
ATTATTGCAAGTTGAAGAAAAAGGATCCAGAAGGAGAAGACGTTTGGCTTATACCCCAGTTGAGCTGCCTGTGGGAGTGG
AGCCGGAGCTTCGCTAGATTTTATTTTCCGCTGCAGTTTTCTTCATGACGCTGCAGCTTCGGAAGATCCGCTCTTCGTGG
AAGTTGGAGCCGACGTTTGGGAAAGCGAGCAAGCTTGTCGTTTCCGTCGTTGCGAAGGTTCGTGAGTGCGTCGGAAGTGA
TCAAGAAGATTAATTGAAGACCTCTTCTGAGCTTGAGAAAAATTGAGCAAGACTGAGTACAACCACCGTACTCAACAAGA
CACACCCACAAATGCAGAATAAATGCAAGGGAGTACAAGGGAGTTATAATAAGGGTTAGGGTTGCAGTAAACAGCATTTA
AAGACATTTAGTTGCTCAAAGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10731.2.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis