Browse Element(s) Details


OsAffx.7600.1.S1_s_at

Description tigr:9640.m01451
TID=OsAffx.7600.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g235901/11transposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g23570OsAffx.31849.1.S1_at11/1112+13343081..13345085hypothetical protein
LOC_Os12g23570OsAffx.26050.3.A1_at1/1112+13343081..13345085hypothetical protein
LOC_Os12g23580NANA12+13358140..13364886retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g23590Os.47114.1.S1_x_at4/1112+13365582..13369632transposon protein, putative, unclassified
LOC_Os12g23590Os.10731.2.A1_at3/1112+13365582..13369632transposon protein, putative, unclassified
LOC_Os12g23590OsAffx.19676.1.S1_at3/1112+13365582..13369632transposon protein, putative, unclassified
LOC_Os12g23590OsAffx.7600.1.S1_s_at1/1112+13365582..13369632transposon protein, putative, unclassified
LOC_Os12g23600NANA12+13375015..13375750hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7600.1.S1_s_at--10--7231Chr12:8540305..8540329 (25 bp)
GTCGCACTGGGAGCTAGTGCTTGCT
NONE
OsAffx.7600.1.S1_s_at--357--9351Chr12:8540306..8540330 (25 bp)
TCGCACTGGGAGCTAGTGCTTGCTA
NONE
OsAffx.7600.1.S1_s_at--94--4131Chr12:8540307..8540331 (25 bp)
CGCACTGGGAGCTAGTGCTTGCTAT
NONE
OsAffx.7600.1.S1_s_at--291--5111Chr12:8540308..8540332 (25 bp)
GCACTGGGAGCTAGTGCTTGCTATC
NONE
OsAffx.7600.1.S1_s_at--909--3332Chr12:8540309..8540333 (25 bp)
CACTGGGAGCTAGTGCTTGCTATCT
NONE
OsAffx.7600.1.S1_s_at--824--1952Chr12:8540310..8540334 (25 bp)
ACTGGGAGCTAGTGCTTGCTATCTC
NONE
OsAffx.7600.1.S1_s_at--881--3891Chr12:8540311..8540335 (25 bp)
CTGGGAGCTAGTGCTTGCTATCTCA
NONE
OsAffx.7600.1.S1_s_at--135--8651Chr12:8540312..8540336 (25 bp)
TGGGAGCTAGTGCTTGCTATCTCAG
NONE
OsAffx.7600.1.S1_s_at--1119--7631Chr12:8540313..8540337 (25 bp)
GGGAGCTAGTGCTTGCTATCTCAGA
NONE
OsAffx.7600.1.S1_s_at--495--8071Chr12:8540314..8540338 (25 bp)
GGAGCTAGTGCTTGCTATCTCAGAA
NONE
OsAffx.7600.1.S1_s_at--956--8134Chr12:8540358..8540382 (25 bp)
GGAAATGTTTGATGCTTCTTGGGGC
NONE
Target Sequence 
GTCGCACTGGGAGCTAGTGCTTGCTATCTCAGAATAGCTCCATGGATCTCATTGGAAATGTTTGATGCTTCTTGGGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7600.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis