Browse Element(s) Details


OsAffx.31849.1.S1_at

Description tigr:9640.m02239
TID=OsAffx.31849.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2357011/11hypothetical protein
LOC_Os02g581701/11hAT family dimerisation domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g23530OsAffx.22722.1.S1_x_at1/1112+13313846..13319168retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g23540OsAffx.1647.1.S1_at2/1112+13320318..13324118retrotransposon protein, putative, unclassified
LOC_Os12g23540OsAffx.20565.1.S1_at1/1112+13320318..13324118retrotransposon protein, putative, unclassified
LOC_Os12g23540OsAffx.10496.1.S1_at1/1112+13320318..13324118retrotransposon protein, putative, unclassified
LOC_Os12g23550OsAffx.19784.1.S1_at11/1112+13326014..13327403hypothetical protein
LOC_Os12g23560NANA12+13334361..13335945retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g23570OsAffx.31849.1.S1_at11/1112+13343081..13345085hypothetical protein
LOC_Os12g23570OsAffx.26050.3.A1_at1/1112+13343081..13345085hypothetical protein
LOC_Os12g23580NANA12+13358140..13364886retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g23590Os.47114.1.S1_x_at4/1112+13365582..13369632transposon protein, putative, unclassified
LOC_Os12g23590Os.10731.2.A1_at3/1112+13365582..13369632transposon protein, putative, unclassified
LOC_Os12g23590OsAffx.19676.1.S1_at3/1112+13365582..13369632transposon protein, putative, unclassified
LOC_Os12g23590OsAffx.7600.1.S1_s_at1/1112+13365582..13369632transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31849.1.S1_at--865--3671Chr12:13344989..13345013 (25 bp)
CTTTCTTTCGGCAGCTTGGGTAGAA
LOC_Os12g23570
OsAffx.31849.1.S1_at--584--752Chr12:13344475..13344499 (25 bp)
ATGGGTGTACCCTGATATAGATGTT
LOC_Os12g23570
OsAffx.31849.1.S1_at--1084--1291Chr12:13344457..13344481 (25 bp)
AGATGTTGATCTCTCAATACCGAAT
LOC_Os12g23570
OsAffx.31849.1.S1_at--1063--3093Chr04:32671126..32671150 (25 bp)
AATACCGAATCCTCATCTATGCAAT
NONE
OsAffx.31849.1.S1_at--774--653Chr04:32671144..32671168 (25 bp)
ATGCAATTCTTGTACTTATTTGATG
NONE
OsAffx.31849.1.S1_at--1104--2332Chr04:32671179..32671411 (25 bp)
AAAGAGATCAGGCTGTTGGACAGAT
NONE
OsAffx.31849.1.S1_at--1100--694Chr04:32671410..32671434 (25 bp)
ATGATGCTTGTATTGCCAGCCTTCA
NONE
OsAffx.31849.1.S1_at--475--5933Chr04:32671458..32671482 (25 bp)
GAGCAGTCTGCGGAACGTTTCACTG
NONE
OsAffx.31849.1.S1_at--404--9172Chr12:13344087..13344111 (25 bp)
TGCCTGGCCTCCTGGGTTTCTGAGG
LOC_Os12g23570
OsAffx.31849.1.S1_at--1072--8414Chr12:20605459..20605483 (25 bp)
GGCCTTTGTGGCACTAGTGGTACAC
NONE
OsAffx.31849.1.S1_at--223--2856Chr12:20605486..20605510 (25 bp)
AAGTCATGGGTGATCATTGGTCCGA
NONE
Target Sequence 
CTTTCTTTCGGCAGCTTGGGTAGAAACAGGCGATATTTTAGTAGATGGGTGTACCCTGATATAGATGTTGATCTCTCAAT
ACCGAATCCTCATCTATGCAATTCTTGTACTTATTTGATGAAAGACAAAGAAAGAGATCAGGCTGTTGGACAGATGATGC
TTGTATTGCCAGCCTTCATCGGCTCCGAGGTGTGGCCGGGTGAGCAGTCTGCGGAACGTTTCACTGCCTGGCCTCCTGGG
TTTCTGAGGGGCCAAGGAGAATCAGAGCAGGACAGGATAAGAGCAAGCCAAGCCAACCCAAGCCAAGGCCTTTGTGGCAC
TAGTGGTACACAGAAGTCATGGGTGATCATTGGTCCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31849.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis