Browse Element(s) Details


OsAffx.19784.1.S1_at

Description tigr:9640.m02237
TID=OsAffx.19784.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2355011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g23520Os.18631.1.S1_at8/1112+13297690..13312897retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os12g23520Os.50549.1.S1_at5/1112+13297690..13312897retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os12g23520Os.10731.2.A1_at3/1112+13297690..13312897retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os12g23520OsAffx.1646.1.S1_x_at1/1112+13297690..13312897retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os12g23530OsAffx.22722.1.S1_x_at1/1112+13313846..13319168retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g23540OsAffx.1647.1.S1_at2/1112+13320318..13324118retrotransposon protein, putative, unclassified
LOC_Os12g23540OsAffx.20565.1.S1_at1/1112+13320318..13324118retrotransposon protein, putative, unclassified
LOC_Os12g23540OsAffx.10496.1.S1_at1/1112+13320318..13324118retrotransposon protein, putative, unclassified
LOC_Os12g23550OsAffx.19784.1.S1_at11/1112+13326014..13327403hypothetical protein
LOC_Os12g23560NANA12+13334361..13335945retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g23570OsAffx.31849.1.S1_at11/1112+13343081..13345085hypothetical protein
LOC_Os12g23570OsAffx.26050.3.A1_at1/1112+13343081..13345085hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19784.1.S1_at--457--3071Chr12:13326557..13326581 (25 bp)
AATCACAGAATATCCCCGCTTTGAT
LOC_Os12g23550
OsAffx.19784.1.S1_at--718--6091Chr12:13326521..13326545 (25 bp)
GAGTCAATCGATGGCTACTTCACCT
LOC_Os12g23550
OsAffx.19784.1.S1_at--330--10531Chr12:13326503..13326527 (25 bp)
TTCACCTCATGTTGAAGGCGCCTAC
LOC_Os12g23550
OsAffx.19784.1.S1_at--475--8831Chr12:13326474..13326498 (25 bp)
TGATTCGGCATCCACTAGCTGAGAG
LOC_Os12g23550
OsAffx.19784.1.S1_at--647--2271Chr12:13326374..13326398 (25 bp)
AAATGACCCACGCATTGACCAGCTG
LOC_Os12g23550
OsAffx.19784.1.S1_at--445--9091Chr12:13326351..13326375 (25 bp)
TGCTGCCGCTGGTGGGAACGTTACC
LOC_Os12g23550
OsAffx.19784.1.S1_at--461--8171Chr12:13326337..13326361 (25 bp)
GGAACGTTACCAAACCTCAACATCA
LOC_Os12g23550
OsAffx.19784.1.S1_at--849--3031Chr12:13326256..13326280 (25 bp)
AATCCTGTTGCAAGAGCCAGCGATC
LOC_Os12g23550
OsAffx.19784.1.S1_at--905--4411Chr12:13326241..13326265 (25 bp)
GCCAGCGATCGGGTGGTAGCTCAAA
LOC_Os12g23550
OsAffx.19784.1.S1_at--102--2491Chr12:13326212..13326236 (25 bp)
AACAGGTTCGTGCAGCAACAACGGC
LOC_Os12g23550
OsAffx.19784.1.S1_at--88--1491Chr12:13326089..13326113 (25 bp)
AGAATTGGCCAACTTCTGCGGCTTA
LOC_Os12g23550
Target Sequence 
AATCACAGAATATCCCCGCTTTGATGTCTTTGGCATGAGTCAATCGATGGCTACTTCACCTCATGTTGAAGGCGCCTACT
CCCTGATTCGGCATCCACTAGCTGAGAGGGTGGCATCGTATGATCGGAAGGCCAAAGAAGCGCATGACGTACAGAAGGAG
CTCGATGATGCCCTGAACAAGCCAAATGACCCACGCATTGACCAGCTGCTGCCGCTGGTGGGAACGTTACCAAACCTCAA
CATCACGGTATACGTCCGCCGCAACGCAAGGATCCGCGACACCTACAATGGTAAGTGGATAAATCCTGTTGCAAGAGCCA
GCGATCGGGTGGTAGCTCAAAACAAAACAGGTTCGTGCAGCAACAACGGCAGTAAGTCCAGGCCAAAGAAGAAGCTGAAA
AAACTGGAAGAAATTGTGGAGATGCCTATCCTGGCAACGCCCCAGCCAACCCCGAAGAAGAAGATCAAAGAATTGGCCAA
CTTCTGCGGCTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19784.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis