Browse Element(s) Details


Os.50549.1.S1_at

Description gb:AK064314.1
DB_XREF= gi:32974332
TID=Os.50549.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.50549 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-107-C08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-107-C08, full insert sequence.
FL= gb:AK121777.1 gb:AK064314.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2346011/11expressed protein
LOC_Os12g235205/11retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os12g236704/11expressed protein
LOC_Os12g235143/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g23420OsAffx.31869.4.S1_x_at9/1112+13241933..13242708retrotransposon protein, putative, unclassified
LOC_Os12g23420OsAffx.31869.4.S1_at9/1112+13241933..13242708retrotransposon protein, putative, unclassified
LOC_Os12g23420OsAffx.31869.3.S1_x_at5/1112+13241933..13242708retrotransposon protein, putative, unclassified
LOC_Os12g23420OsAffx.31869.3.S1_s_at4/1112+13241933..13242708retrotransposon protein, putative, unclassified
LOC_Os12g23420OsAffx.31869.3.S1_at3/1112+13241933..13242708retrotransposon protein, putative, unclassified
LOC_Os12g23420OsAffx.31869.5.S1_x_at3/1112+13241933..13242708retrotransposon protein, putative, unclassified
LOC_Os12g23430OsAffx.29789.1.S1_x_at11/1112+13243449..13245516hAT family dimerisation domain containing protein
LOC_Os12g23430OsAffx.29789.3.S1_x_at1/1112+13243449..13245516hAT family dimerisation domain containing protein
LOC_Os12g23430OsAffx.31885.2.S1_x_at1/1112+13243449..13245516hAT family dimerisation domain containing protein
LOC_Os12g23440NANA12+13251441..13258028retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g23450OsAffx.7675.1.S1_at11/1112+13263083..13265482hypothetical protein
LOC_Os12g23460Os.50549.1.S1_at11/1112+13267650..13269173expressed protein
LOC_Os12g23460OsAffx.24340.1.S1_at1/1112+13267650..13269173expressed protein
LOC_Os12g23460OsAffx.27496.2.S1_x_at1/1112+13267650..13269173expressed protein
LOC_Os12g23470OsAffx.5075.1.S1_x_at1/1112+13270244..13271714retrotransposon protein, putative, unclassified
LOC_Os12g23480NANA12+13273350..13274543retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g23490OsAffx.19056.1.S1_at1/1112+13279200..13283186retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g23500Os.10731.1.A1_a_at8/1112+13284818..13286316retrotransposon protein, putative, unclassified
LOC_Os12g23500OsAffx.31869.5.S1_x_at3/1112+13284818..13286316retrotransposon protein, putative, unclassified
LOC_Os12g23500Os.38764.1.S1_x_at2/1112+13284818..13286316retrotransposon protein, putative, unclassified
LOC_Os12g23500OsAffx.31869.4.S1_x_at2/1112+13284818..13286316retrotransposon protein, putative, unclassified
LOC_Os12g23500OsAffx.31869.4.S1_at1/1112+13284818..13286316retrotransposon protein, putative, unclassified
LOC_Os12g23500Os.45173.1.S1_x_at1/1112+13284818..13286316retrotransposon protein, putative, unclassified
LOC_Os12g23510OsAffx.31848.1.S1_x_at11/1112+13290225..13291355hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50549.1.S1_at--346--10092Chr12:13296534..13296558 (25 bp)
TAGGAGATCGTGAGCCTGGCCGCTT
LOC_Os12g23514
Os.50549.1.S1_at--1052--5873Chr12:13429461..13429485 (25 bp)
GAGCTGTTCAACAACTACTGGACCA
LOC_Os12g23670
Os.50549.1.S1_at--786--9193Chr12:13296738..13296762 (25 bp)
TCCACGACCCGATGGTTGTGTACAA
LOC_Os12g23514
Os.50549.1.S1_at--871--6152Chr12:13301306..13301330 (25 bp)
GAGGTAGAGCGCTGCTTCCCAGAGC
LOC_Os12g23520
Os.50549.1.S1_at--299--1352Chr12:13301326..13301350 (25 bp)
AGAGCAAGGTCCGTCGAACTACTCC
LOC_Os12g23520
Os.50549.1.S1_at--75--7871Chr12:13268932..13268956 (25 bp)
GGTTTGGATTCTCCCATGAGGCGCA
LOC_Os12g23460
Os.50549.1.S1_at--919--6211Chr12:13268949..13268973 (25 bp)
GAGGCGCACGACACATGTTTTTGGT
LOC_Os12g23460
Os.50549.1.S1_at--536--13Chr12:13429794..13429818 (25 bp)
ATTGTTGCCGGTGATCAGGCTAGTC
LOC_Os12g23670
Os.50549.1.S1_at--601--3493Chr12:13429809..13429833 (25 bp)
CAGGCTAGTCTGTGATCGTTGCTAA
LOC_Os12g23670
Os.50549.1.S1_at--360--10732Chr12:13301438..13301462 (25 bp)
TTGCTAAGCTTTCATGCCTTCATCA
LOC_Os12g23520
Os.50549.1.S1_at--18--5611Chr12:13269141..13269165 (25 bp)
GAAATTGATCTGCAGGTGACTTACC
LOC_Os12g23460
Target Sequence 
TAGGAGATCGTGAGCCTGGCCGCTTGCCGACCACGACGTTCCGGGTGTTCGAGAGAGAAGACGAGCTGTTCAACAACTAC
TGGACCAAGCTGCCCGACCTTGGCGGCCGAATGCTGTTCGTCGGAAGAGGCTGCTCCAGATCGTACGAAGCGGCAGATGG
GTACCCCGGCATGGAGGGCGTCTACTTCCTGGACGACCGGAGCTTCCACGACCCGATGGTTGTGTACAAGGATGCCGCCC
AACGGCGGTATCCCTGCAGCGACAACGGGAGATGGTCGGGAGCACCGCCACCAGCGGAGGTAGAGCGCTGCTTCCCAGAG
CAAGGTCCGTCGAACTACTCCCCTCCGGTTTGGATTCTCCCATGAGGCGCACGACACATGTTTTTGGTTGTTGAAATTGT
TGCCGGTGATCAGGCTAGTCTGTGATCGTTGCTAAGCTTTCATGCCTTCATCAGCATGTACTGTGTTAGTGTGTTTATTC
GTTGAGTTTGGATGGTTTTCTCGTGTTAAAATTGTTACTGGTGTAAGCTGAAGCAGGATTGCTCAATTCAGTGGAGAAAT
TGATCTGCAGGTGACTTACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50549.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis