Browse Element(s) Details


OsAffx.31869.3.S1_s_at

Description gb:NM_194888.1
DB_XREF= gi:37531135
TID=OsAffx.31869.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative polyprotein (OSJNBa0028C16.19), mRNA.
PROD=putative polyprotein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2377011/11retrotransposon protein, putative, unclassified
LOC_Os10g0626011/11retrotransposon protein, putative, unclassified
LOC_Os10g0996011/11retrotransposon protein, putative, unclassified, expressed
LOC_Os04g139504/11retrotransposon protein, putative, unclassified
LOC_Os05g243704/11retrotransposon protein, putative, unclassified
LOC_Os10g226204/11retrotransposon protein, putative, unclassified
LOC_Os12g234204/11retrotransposon protein, putative, unclassified
LOC_Os01g232304/11retrotransposon protein, putative, unclassified
LOC_Os03g323704/11retrotransposon protein, putative, unclassified
LOC_Os05g298404/11retrotransposon protein, putative, unclassified
LOC_Os05g243804/11retrotransposon protein, putative, unclassified
LOC_Os06g386034/11retrotransposon protein, putative, unclassified
LOC_Os06g273904/11retrotransposon protein, putative, unclassified
LOC_Os07g192404/11retrotransposon protein, putative, unclassified
LOC_Os01g380583/11retrotransposon protein, putative, unclassified
LOC_Os08g165103/11retrotransposon protein, putative, unclassified
LOC_Os04g053403/11retrotransposon protein, putative, unclassified
LOC_Os11g171803/11retrotransposon protein, putative, unclassified
LOC_Os01g380493/11retrotransposon protein, putative, unclassified
LOC_Os11g262703/11retrotransposon protein, putative, unclassified
LOC_Os08g103703/11retrotransposon protein, putative, unclassified
LOC_Os10g030203/11retrotransposon protein, putative, unclassified
LOC_Os12g115903/11retrotransposon protein, putative, unclassified
LOC_Os01g267403/11retrotransposon protein, putative, unclassified
LOC_Os06g369003/11retrotransposon protein, putative, unclassified
LOC_Os09g105302/11retrotransposon protein, putative, unclassified
LOC_Os07g458502/11retrotransposon protein, putative, unclassified
LOC_Os07g331702/11retrotransposon protein, putative, unclassified
LOC_Os08g195101/11retrotransposon protein, putative, unclassified
LOC_Os08g123301/11retrotransposon protein, putative, unclassified
LOC_Os12g183101/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g257401/11retrotransposon protein, putative, unclassified
LOC_Os05g204901/11retrotransposon protein, putative, unclassified
LOC_Os04g159991/11retrotransposon protein, putative, unclassified
LOC_Os08g207001/11retrotransposon protein, putative, unclassified
LOC_Os06g149901/11retrotransposon protein, putative, unclassified
LOC_Os02g279301/11retrotransposon protein, putative, unclassified
LOC_Os05g173401/11retrotransposon protein, putative, unclassified
LOC_Os04g166491/11retrotransposon protein, putative, unclassified
LOC_Os03g613701/11retrotransposon protein, putative, unclassified
LOC_Os10g189701/11retrotransposon protein, putative, unclassified
LOC_Os08g195701/11retrotransposon protein, putative, unclassified
LOC_Os04g048201/11retrotransposon protein, putative, unclassified
LOC_Os09g030601/11retrotransposon protein, putative, unclassified
LOC_Os09g014501/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g300001/11retrotransposon protein, putative, unclassified
LOC_Os07g130001/11retrotransposon protein, putative, unclassified
LOC_Os05g445001/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g23230Os.24831.3.S1_x_at7/113+13425784..13428505retrotransposon protein, putative, unclassified
LOC_Os03g23230Os.24831.1.S1_x_at6/113+13425784..13428505retrotransposon protein, putative, unclassified
LOC_Os03g23230Os.24831.4.S1_x_at4/113+13425784..13428505retrotransposon protein, putative, unclassified
LOC_Os03g23230Os.55127.1.S1_at1/113+13425784..13428505retrotransposon protein, putative, unclassified
LOC_Os03g23230Os.24831.3.S1_s_at1/113+13425784..13428505retrotransposon protein, putative, unclassified
LOC_Os03g23250OsAffx.3301.1.S1_at11/113+13430307..13436970hypothetical protein
LOC_Os03g23250Os.33878.1.S1_at2/113+13430307..13436970hypothetical protein
LOC_Os03g23250Os.27102.1.S1_x_at1/113+13430307..13436970hypothetical protein
LOC_Os03g23760Os.23638.1.A1_x_at1/113+13439226..13448102retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g23760OsAffx.20877.1.S1_at1/113+13439226..13448102retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g23770OsAffx.31869.3.S1_s_at11/113+13452793..13453890retrotransposon protein, putative, unclassified
LOC_Os03g23770OsAffx.31869.3.S1_x_at5/113+13452793..13453890retrotransposon protein, putative, unclassified
LOC_Os03g23770OsAffx.31869.5.S1_x_at4/113+13452793..13453890retrotransposon protein, putative, unclassified
LOC_Os03g23770OsAffx.31869.3.S1_at2/113+13452793..13453890retrotransposon protein, putative, unclassified
LOC_Os03g23770OsAffx.31869.4.S1_x_at1/113+13452793..13453890retrotransposon protein, putative, unclassified
LOC_Os03g23770OsAffx.31869.2.S1_at1/113+13452793..13453890retrotransposon protein, putative, unclassified
LOC_Os03g23780OsAffx.731.1.S1_x_at1/113+13456379..13462003retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os03g23790Os.23638.1.A1_x_at1/113+13463982..13465868retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g23800NANA3+13470589..13477323retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31869.3.S1_s_at--708--71716Chr12:6285820..6285839 (20 bp)
TTCGTAAAAGAGTGTCCGAAGCCGA
LOC_Os12g11590
OsAffx.31869.3.S1_s_at--229--93916Chr12:6285820..6285840 (21 bp)
TCGTAAAAGAGTGTCCGAAGCCGAA
LOC_Os12g11590
OsAffx.31869.3.S1_s_at--82--40329Chr12:6285820..6285841 (22 bp)
CGTAAAAGAGTGTCCGAAGCCGAAG
LOC_Os12g11590
OsAffx.31869.3.S1_s_at--412--98136Chr12:8598081..8598100 (20 bp)
TAAAAGAGTGTCCGAAGCCGAAGCG
NONE
OsAffx.31869.3.S1_s_at--468--9053Chr10:5167864..5167888 (25 bp)
TGCAGTGCCGGTTGTGTCTTCAAGT
LOC_Os10g09960
OsAffx.31869.3.S1_s_at--647--5013Chr10:5167865..5167889 (25 bp)
GCAGTGCCGGTTGTGTCTTCAAGTG
LOC_Os10g09960
OsAffx.31869.3.S1_s_at--781--3453Chr10:5167866..5167890 (25 bp)
CAGTGCCGGTTGTGTCTTCAAGTGT
LOC_Os10g09960
OsAffx.31869.3.S1_s_at--810--1113Chr10:5167867..5167891 (25 bp)
AGTGCCGGTTGTGTCTTCAAGTGTT
LOC_Os10g09960
OsAffx.31869.3.S1_s_at--281--7293Chr10:5167868..5167892 (25 bp)
GTGCCGGTTGTGTCTTCAAGTGTTA
LOC_Os10g09960
OsAffx.31869.3.S1_s_at--121--91919Chr11:14540488..14540507 (20 bp)
TGCCGGTTGTGTCTTCAAGTGTTAC
LOC_Os11g26270
OsAffx.31869.3.S1_s_at--1133--44719Chr11:14540488..14540508 (21 bp)
GCCGGTTGTGTCTTCAAGTGTTACA
LOC_Os11g26270
Target Sequence 
TTCGTAAAAGAGTGTCCGAAGCCGAAGCGTCAACAGCCACAAGGCCAAGTCAACAACATTGTCCTCACAGGAGCAAATGC
AGTGCCGGTTGTGTCTTCAAGTGTTACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31869.3.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis