Browse Element(s) Details


Os.23638.1.A1_x_at

Description gb:CA760169
DB_XREF= gi:25804208
DB_XREF=BR060014B10C04.ab1
CLONE=BR060014B10C04.ab1
TID=Os.23638.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.23638 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g111904/11hypothetical protein
LOC_Os10g099701/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g118301/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g124901/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g166901/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g119701/11retrotransposon protein, putative, unclassified
LOC_Os05g179501/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g095001/11retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os01g267521/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g155801/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g237901/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g119601/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g094601/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g065201/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g246801/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g173701/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g176301/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g196901/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g146101/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g237601/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g233901/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g094401/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g11140OsAffx.29146.5.S1_at11/118+6542239..6542718hypothetical protein
LOC_Os08g11140OsAffx.29146.5.S1_x_at11/118+6542239..6542718hypothetical protein
LOC_Os08g11140OsAffx.29146.4.S1_s_at11/118+6542239..6542718hypothetical protein
LOC_Os08g11150OsAffx.17598.1.S1_at2/118+6544181..6553935retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g11150OsAffx.21249.1.S1_at1/118+6544181..6553935retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g11160Os.10731.1.A1_a_at11/118+6556616..6557548retrotransposon protein, putative, unclassified
LOC_Os08g11160Os.38764.1.S1_x_at8/118+6556616..6557548retrotransposon protein, putative, unclassified
LOC_Os08g11160Os.48015.1.A1_x_at3/118+6556616..6557548retrotransposon protein, putative, unclassified
LOC_Os08g11160Os.45173.1.S1_x_at2/118+6556616..6557548retrotransposon protein, putative, unclassified
LOC_Os08g11170OsAffx.18229.1.S1_x_at1/118+6558535..6560215hypothetical protein
LOC_Os08g11180OsAffx.10632.1.S1_at1/118+6561142..6566902retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g11190OsAffx.16948.1.S1_at11/118+6567533..6570299hypothetical protein
LOC_Os08g11190Os.23638.1.A1_at4/118+6567533..6570299hypothetical protein
LOC_Os08g11190Os.23638.1.A1_x_at4/118+6567533..6570299hypothetical protein
LOC_Os08g11200Os.52096.1.S1_at9/118+6570897..6579387retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g11200OsAffx.16946.1.S1_at2/118+6570897..6579387retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g11200Os.5263.1.S1_x_at1/118+6570897..6579387retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g11210Os.10731.1.A1_a_at11/118+6580623..6581487retrotransposon protein, putative, unclassified
LOC_Os08g11210Os.38764.1.S1_x_at7/118+6580623..6581487retrotransposon protein, putative, unclassified
LOC_Os08g11220Os.16492.1.S1_at10/118+6591927..6597034expressed protein
LOC_Os08g11220Os.18151.1.S1_at9/118+6591927..6597034expressed protein
LOC_Os08g11220Os.50541.1.S1_at1/118+6591927..6597034expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23638.1.A1_x_at--1142--9533Chr07:9703880..9703943 (25 bp)
TCTACCTCTGTAATATTCTATTATT
NONE
Os.23638.1.A1_x_at--505--97584Chr12:11468425..11468445 (21 bp)
TAATTTGTCATTGTGTGCCTCGGTT
LOC_Os12g19690
Os.23638.1.A1_x_at--35--8671Chr08:6569551..6569575 (25 bp)
TGTGGCCCTCCACCTGCTTTTTAGA
LOC_Os08g11190
Os.23638.1.A1_x_at--363--4531Chr08:6569555..6569579 (25 bp)
GCCCTCCACCTGCTTTTTAGATTTT
LOC_Os08g11190
Os.23638.1.A1_x_at--1058--3811Chr08:6569558..6569582 (25 bp)
CTCCACCTGCTTTTTAGATTTTTTG
LOC_Os08g11190
Os.23638.1.A1_x_at--195--6711NONE
GTTCGTCGTGGAGGGCGAACAATTT
NONE
Os.23638.1.A1_x_at--378--3991NONE
CGTGGAGGGCGAACAATTTATATTT
NONE
Os.23638.1.A1_x_at--999--171NONE
ATTTATATTTGACCGATGGCCCTCT
NONE
Os.23638.1.A1_x_at--716--10411NONE
TTATATTTGACCGATGGCCCTCTTA
NONE
Os.23638.1.A1_x_at--984--10191NONE
TATTTGACCGATGGCCCTCTTACCT
NONE
Os.23638.1.A1_x_at--883--871Chr08:6569632..6569656 (25 bp)
ATGGCCCTCTTACCTTCTTATTGTA
LOC_Os08g11190
Target Sequence 
TCTACCTCTGTAATATTCTATTATTTGCGAATATTAAGTAGTTATTTATTTGTACTCTATTATTAATTTGTCATTGTGTG
CCTCGGTTGATTCCTGGACGAGGGTTTAACACACATGTAAGCGTTTGGAATTTTGGATAGAAATTCCGGGCGTGACAGGA
GGCGATGCCGAAGATCACCCAGAGGTGTGTGGCCCTCCACCTGCTTTTTAGATTTTTTGGCTTTCTTTTTGTGTTCGTCG
TGGAGGGCGAACAATTTATATTTGACCGATGGCCCTCTTACCTTCTTATTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23638.1.A1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis