Browse Element(s) Details


Os.23638.1.A1_at

Description gb:CA760169
DB_XREF= gi:25804208
DB_XREF=BR060014B10C04.ab1
CLONE=BR060014B10C04.ab1
TID=Os.23638.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.23638 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g111904/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g11140OsAffx.29146.5.S1_at11/118+6542239..6542718hypothetical protein
LOC_Os08g11140OsAffx.29146.5.S1_x_at11/118+6542239..6542718hypothetical protein
LOC_Os08g11140OsAffx.29146.4.S1_s_at11/118+6542239..6542718hypothetical protein
LOC_Os08g11150OsAffx.17598.1.S1_at2/118+6544181..6553935retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g11150OsAffx.21249.1.S1_at1/118+6544181..6553935retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g11160Os.10731.1.A1_a_at11/118+6556616..6557548retrotransposon protein, putative, unclassified
LOC_Os08g11160Os.38764.1.S1_x_at8/118+6556616..6557548retrotransposon protein, putative, unclassified
LOC_Os08g11160Os.48015.1.A1_x_at3/118+6556616..6557548retrotransposon protein, putative, unclassified
LOC_Os08g11160Os.45173.1.S1_x_at2/118+6556616..6557548retrotransposon protein, putative, unclassified
LOC_Os08g11170OsAffx.18229.1.S1_x_at1/118+6558535..6560215hypothetical protein
LOC_Os08g11180OsAffx.10632.1.S1_at1/118+6561142..6566902retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g11190OsAffx.16948.1.S1_at11/118+6567533..6570299hypothetical protein
LOC_Os08g11190Os.23638.1.A1_at4/118+6567533..6570299hypothetical protein
LOC_Os08g11190Os.23638.1.A1_x_at4/118+6567533..6570299hypothetical protein
LOC_Os08g11200Os.52096.1.S1_at9/118+6570897..6579387retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g11200OsAffx.16946.1.S1_at2/118+6570897..6579387retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g11200Os.5263.1.S1_x_at1/118+6570897..6579387retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g11210Os.10731.1.A1_a_at11/118+6580623..6581487retrotransposon protein, putative, unclassified
LOC_Os08g11210Os.38764.1.S1_x_at7/118+6580623..6581487retrotransposon protein, putative, unclassified
LOC_Os08g11220Os.16492.1.S1_at10/118+6591927..6597034expressed protein
LOC_Os08g11220Os.18151.1.S1_at9/118+6591927..6597034expressed protein
LOC_Os08g11220Os.50541.1.S1_at1/118+6591927..6597034expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23638.1.A1_at--1143--9533Chr07:9703880..9703943 (25 bp)
TCTACCTCTGTAATATTCTATTATT
NONE
Os.23638.1.A1_at--980--3871NONE
CTGTAATATTCTATTATTTGCGAAT
NONE
Os.23638.1.A1_at--34--8671Chr08:6569551..6569575 (25 bp)
TGTGGCCCTCCACCTGCTTTTTAGA
LOC_Os08g11190
Os.23638.1.A1_at--364--4531Chr08:6569555..6569579 (25 bp)
GCCCTCCACCTGCTTTTTAGATTTT
LOC_Os08g11190
Os.23638.1.A1_at--1057--3811Chr08:6569558..6569582 (25 bp)
CTCCACCTGCTTTTTAGATTTTTTG
LOC_Os08g11190
Os.23638.1.A1_at--194--6711NONE
GTTCGTCGTGGAGGGCGAACAATTT
NONE
Os.23638.1.A1_at--377--3991NONE
CGTGGAGGGCGAACAATTTATATTT
NONE
Os.23638.1.A1_at--998--171NONE
ATTTATATTTGACCGATGGCCCTCT
NONE
Os.23638.1.A1_at--717--10411NONE
TTATATTTGACCGATGGCCCTCTTA
NONE
Os.23638.1.A1_at--985--10191NONE
TATTTGACCGATGGCCCTCTTACCT
NONE
Os.23638.1.A1_at--882--871Chr08:6569632..6569656 (25 bp)
ATGGCCCTCTTACCTTCTTATTGTA
LOC_Os08g11190
Target Sequence 
TCTACCTCTGTAATATTCTATTATTTGCGAATATTAAGTAGTTATTTATTTGTACTCTATTATTAATTTGTCATTGTGTG
CCTCGGTTGATTCCTGGACGAGGGTTTAACACACATGTAAGCGTTTGGAATTTTGGATAGAAATTCCGGGCGTGACAGGA
GGCGATGCCGAAGATCACCCAGAGGTGTGTGGCCCTCCACCTGCTTTTTAGATTTTTTGGCTTTCTTTTTGTGTTCGTCG
TGGAGGGCGAACAATTTATATTTGACCGATGGCCCTCTTACCTTCTTATTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23638.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis