Browse Element(s) Details


Os.16492.1.S1_at

Description gb:AK065398.1
DB_XREF= gi:32975416
TID=Os.16492.1
CNT=11
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.16492 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-046-B07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013022L16, full insert sequence.
FL= gb:AK105081.1 gb:AK065398.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1172010/11expressed protein
LOC_Os08g1122010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g11680NANA8+6840727..6841713transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g11690NANA8+6843168..6843818transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g11700OsAffx.29149.1.S1_at10/118+6848567..6849275hypothetical protein
LOC_Os08g11720Os.18151.1.S1_at11/118+6860093..6865243expressed protein
LOC_Os08g11720Os.16492.1.S1_at10/118+6860093..6865243expressed protein
LOC_Os08g11720Os.50541.1.S1_at1/118+6860093..6865243expressed protein
LOC_Os08g11730NANA8+6874285..6874545retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g11740OsAffx.31869.1.S1_at8/118+6879909..6881018retrotransposon protein, putative, unclassified
LOC_Os08g11740OsAffx.31869.5.S1_x_at6/118+6879909..6881018retrotransposon protein, putative, unclassified
LOC_Os08g11740OsAffx.31869.4.S1_x_at2/118+6879909..6881018retrotransposon protein, putative, unclassified
LOC_Os08g11740OsAffx.31869.4.S1_at1/118+6879909..6881018retrotransposon protein, putative, unclassified
LOC_Os08g11760Os.52096.1.S1_at11/118+6884757..6887329expressed protein
LOC_Os08g11760Os.46610.1.S1_x_at7/118+6884757..6887329expressed protein
LOC_Os08g11760Os.52049.1.S1_at1/118+6884757..6887329expressed protein
LOC_Os08g11760Os.53292.1.S1_at1/118+6884757..6887329expressed protein
LOC_Os08g11760Os.53292.1.S1_x_at1/118+6884757..6887329expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16492.1.S1_at--336--3511NONE
CATGGGTGGCATACAGGTTCTGTTT
NONE
Os.16492.1.S1_at--394--3312Chr08:6596090..6596114 (25 bp)
CACATAACTGTGTACTCTTCTAAGT
LOC_Os08g11220
Os.16492.1.S1_at--322--6894Chr08:6596113..6596137 (25 bp)
GTATATCTGGGCTTCTATTGAGTCA
LOC_Os08g11220
Os.16492.1.S1_at--857--752Chr08:6596165..6596634 (25 bp)
ATGTCACTTTCATGGGTGGTGTCAT
LOC_Os08g11220
Os.16492.1.S1_at--1017--5332Chr08:6596643..6596667 (25 bp)
GAAGTATCCTGTTGTCGCATCGAGC
LOC_Os08g11220
Os.16492.1.S1_at--56--6632Chr08:6596653..6596677 (25 bp)
GTTGTCGCATCGAGCCATCTGCTAT
LOC_Os08g11220
Os.16492.1.S1_at--894--472Chr08:6596669..6596693 (25 bp)
ATCTGCTATCGCACTATCAGTTGTG
LOC_Os08g11220
Os.16492.1.S1_at--642--7955Chr10:6774807..6774826 (20 bp)
GGATCACATTCCTCAAATCGGCTAT
NONE
Os.16492.1.S1_at--1071--9432Chr08:6596756..6596780 (25 bp)
TCGGCTATACCGTTCTAGATTATTG
LOC_Os08g11220
Os.16492.1.S1_at--22--2072Chr08:6596831..6596855 (25 bp)
ACTTCCTCAATCCATCGATGCAAGA
LOC_Os08g11220
Os.16492.1.S1_at--121--2414Chr08:6596875..6596899 (25 bp)
AAACATCTTTTTGGCTGCTTTAGCT
LOC_Os08g11220
Target Sequence 
CATGGGTGGCATACAGGTTCTGTTTTTTTTTCGAGATTTCAAAGAGTCAGAAGCATATTTCTACACATAACTGTGTACTC
TTCTAAGTATATCTGGGCTTCTATTGAGTCAGTATTGGATATAATCACATGGTTTGTTATGTCACTTTCATGGGTGGTGT
CATTTTGGGACGAAGTATCCTGTTGTCGCATCGAGCCATCTGCTATCGCACTATCAGTTGTGGATGGAAAAAAAATAAAA
AGGATCAAAATCTAGGGAGTCAAACTAGGATCACATTCCTCAAATCGGCTATACCGTTCTAGATTATTGTTCTGAAACAT
ATTCCATAGTTTTAGAAGAGATATACCCCCTCTCGGTCCACTTCCTCAATCCATCGATGCAAGAACTTTTGAGACTTAGA
CAAAAACATCTTTTTGGCTGCTTTAGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16492.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis