Browse Element(s) Details


Os.53292.1.S1_at

Description gb:AK071829.1
DB_XREF= gi:32981852
TID=Os.53292.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53292 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023116O20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023116O20, full insert sequence.
FL= gb:AK071829.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g355203/11retrotransposon protein, putative, unclassified
LOC_Os12g168103/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g139603/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g300102/11transposon protein, putative, unclassified
LOC_Os09g115002/11retrotransposon protein, putative, unclassified
LOC_Os09g139702/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g116002/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g053301/11Protein kinase domain containing protein
LOC_Os12g363601/11hypothetical protein
LOC_Os04g053401/11retrotransposon protein, putative, unclassified
LOC_Os11g178301/11transposon protein, putative, Mutator sub-class
LOC_Os04g189801/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g254301/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g392701/11hypothetical protein
LOC_Os08g117601/11expressed protein
LOC_Os08g211241/11retrotransposon protein, putative, unclassified
LOC_Os08g215901/11Phosphatidylinositol 3-kinase, root isoform, putative, expressed
LOC_Os05g183701/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g35480Os.12022.1.S1_at11/118+22225630..22228173Protein of unknown function containing protein, expressed
LOC_Os08g35490NANA8+22229496..22230026Ctr copper transporter family protein
LOC_Os08g35500NANA8+22232205..22232830expressed protein
LOC_Os08g35510OsAffx.6033.1.S1_at11/118+22236535..22238097Cytochrome P450 family protein
LOC_Os08g35520Os.10731.1.A1_a_at11/118+22250483..22256733retrotransposon protein, putative, unclassified
LOC_Os08g35520Os.53292.1.S1_at3/118+22250483..22256733retrotransposon protein, putative, unclassified
LOC_Os08g35520Os.53292.1.S1_x_at3/118+22250483..22256733retrotransposon protein, putative, unclassified
LOC_Os08g35520OsAffx.18229.1.S1_x_at1/118+22250483..22256733retrotransposon protein, putative, unclassified
LOC_Os08g35520Os.46610.1.S1_x_at1/118+22250483..22256733retrotransposon protein, putative, unclassified
LOC_Os08g35530OsAffx.6034.1.S1_at11/118+22259709..22260897hypothetical protein
LOC_Os08g35540NANA8+22261951..22263344retrotransposon protein, putative, unclassified
LOC_Os08g35550NANA8+22265826..22266742hypothetical protein
LOC_Os08g35560Os.54856.1.S1_at10/118+22268417..22271226expressed protein
LOC_Os08g35560Os.49232.1.S1_x_at6/118+22268417..22271226expressed protein
LOC_Os08g35560Os.47346.1.A1_x_at1/118+22268417..22271226expressed protein
LOC_Os08g35570Os.55680.1.S1_at11/118+22275561..22276111expressed protein
LOC_Os08g35580OsAffx.6035.1.S1_at11/118+22280347..22280796expressed protein
LOC_Os08g35590OsAffx.17348.1.S1_at11/118+22281615..22282076hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0046489biological_processphosphoinositide biosynthesis
GO:0005634cellular_componentnucleus
GO:0004428molecular_functioninositol or phosphatidylinositol kinase activity
GO:0004430molecular_function1-phosphatidylinositol 4-kinase activity
GO:0016301molecular_functionkinase activity
GO:0016303molecular_functionphosphatidylinositol 3-kinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53292.1.S1_at--141--7191Chr02:3553354..3553375 (22 bp)
GTCTGTCGTCGTGGAAGTGGTGCTT
NONE
Os.53292.1.S1_at--1127--421307Chr12:2064171..2064589 (25 bp)
CCGATTATTGCAAGGTCGTGCTCAT
NONE
Os.53292.1.S1_at--156--405218Chr12:6294610..6295028 (25 bp)
CGATTATTGCAAGGTCGTGCTCATG
LOC_Os12g11600
Os.53292.1.S1_at--994--90145Chr12:13483813..13483835 (23 bp)
TGCGAAGGGTATTGTCACGATTTTT
NONE
Os.53292.1.S1_at--256--8731Chr02:3552124..3552148 (25 bp)
TGTCACGATTTTTCCCTTTGCAGTG
NONE
Os.53292.1.S1_at--802--7091Chr02:3552123..3552147 (25 bp)
GTCACGATTTTTCCCTTTGCAGTGC
NONE
Os.53292.1.S1_at--1106--831Chr02:3552120..3552144 (25 bp)
ACGATTTTTCCCTTTGCAGTGCCGT
NONE
Os.53292.1.S1_at--343--175Chr11:12749181..12749200 (20 bp)
ATTTTTCCCTTTGCAGTGCCGTGGT
NONE
Os.53292.1.S1_at--231--106539Chr12:13483838..13483860 (23 bp)
TTCCCTTTGCAGTGCCGTGGTGGTA
NONE
Os.53292.1.S1_at--59--102745Chr12:13483841..13483865 (25 bp)
TTTGCAGTGCCGTGGTGGTACTTCG
NONE
Os.53292.1.S1_at--943--7833Chr10:12134322..12134346 (25 bp)
GGTAACATGTGTGGAATTGTGTCTT
NONE
Target Sequence 
GTCTGTCGTCGTGGAAGTGGTGCTTGTCGTATCCGTTGTTGCGAAGGTTCGTGAGTACGTCGGAAGTGTTCAAGAAGACT
AATTGAAGACCGATTATTGCAAGGTCGTGCTCATGACAATTAAGGACCGGTTCACGAGCTACTGTTGTGAGACATTAACC
GTGTCAACCACAAGCCAGCGTGGGCAACGATTTTACCTTTTGTATAGCATGGTTCATTACGGGGTGCCAGAATGAGAAGC
GGCGAGAAGTCCGTGGGGGTTGCTGGGGAGTCCATGCCTCTGGTTTTTGAGGGGGTGATTATGATCCAGGAATGGTGCAC
TGTGGTGAGTTGTGTTGTGCGAAGGGTATTGTCACGATTTTTCCCTTTGCAGTGCCGTGGTGGTACTTCGGGGCATGGTA
ACATGTGTGGAATTGTGTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53292.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis