Browse Element(s) Details


Os.54856.1.S1_at

Description gb:AK106916.1
DB_XREF= gi:32992125
TID=Os.54856.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54856 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-119-A12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-119-A12, full insert sequence.
FL= gb:AK106916.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3556010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g35520Os.10731.1.A1_a_at11/118+22250483..22256733retrotransposon protein, putative, unclassified
LOC_Os08g35520Os.53292.1.S1_at3/118+22250483..22256733retrotransposon protein, putative, unclassified
LOC_Os08g35520Os.53292.1.S1_x_at3/118+22250483..22256733retrotransposon protein, putative, unclassified
LOC_Os08g35520OsAffx.18229.1.S1_x_at1/118+22250483..22256733retrotransposon protein, putative, unclassified
LOC_Os08g35520Os.46610.1.S1_x_at1/118+22250483..22256733retrotransposon protein, putative, unclassified
LOC_Os08g35530OsAffx.6034.1.S1_at11/118+22259709..22260897hypothetical protein
LOC_Os08g35540NANA8+22261951..22263344retrotransposon protein, putative, unclassified
LOC_Os08g35550NANA8+22265826..22266742hypothetical protein
LOC_Os08g35560Os.54856.1.S1_at10/118+22268417..22271226expressed protein
LOC_Os08g35560Os.49232.1.S1_x_at6/118+22268417..22271226expressed protein
LOC_Os08g35560Os.47346.1.A1_x_at1/118+22268417..22271226expressed protein
LOC_Os08g35570Os.55680.1.S1_at11/118+22275561..22276111expressed protein
LOC_Os08g35580OsAffx.6035.1.S1_at11/118+22280347..22280796expressed protein
LOC_Os08g35590OsAffx.17348.1.S1_at11/118+22281615..22282076hypothetical protein
LOC_Os08g35600Os.54867.1.S1_at11/118+22283036..22285772Protein kinase APK1B, chloroplast precursor, putative, expressed
LOC_Os08g35610NANA8+22290376..22291260transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54856.1.S1_at--216--2231Chr08:22270682..22270706 (25 bp)
ACAATCAATGGACGTGCCGTTCTTC
LOC_Os08g35560
Os.54856.1.S1_at--1094--1171Chr08:22270888..22270912 (25 bp)
AGTACTGCCCCGACGTCAGGGTGGA
LOC_Os08g35560
Os.54856.1.S1_at--131--8671Chr08:22270924..22270948 (25 bp)
TGTGGCTCAACTGCGCGGCGCTCTT
LOC_Os08g35560
Os.54856.1.S1_at--671--8711Chr08:22271005..22271029 (25 bp)
TGTCGCCGCTTGTCCAGGTGATGGT
LOC_Os08g35560
Os.54856.1.S1_at--479--1051Chr08:22271020..22271044 (25 bp)
AGGTGATGGTCGAACACCTGACCAG
LOC_Os08g35560
Os.54856.1.S1_at--813--1751Chr08:22271035..22271059 (25 bp)
ACCTGACCAGGTTCACGGAGACCAT
LOC_Os08g35560
Os.54856.1.S1_at--944--4671Chr08:22271061..22271085 (25 bp)
GCGGTGACCGCGTTCGCGCATGACT
LOC_Os08g35560
Os.54856.1.S1_at--1010--4571NONE
GCGCATGACTTCTGCATCTTTATAA
NONE
Os.54856.1.S1_at--999--4951Chr08:22271089..22271114 (25 bp)
GCATCTTTATAAGCTCGTGAGGCTG
LOC_Os08g35560
Os.54856.1.S1_at--832--8351Chr08:22271124..22271148 (25 bp)
GGCGAGGAACCGAAGGCCATTTCTC
LOC_Os08g35560
Os.54856.1.S1_at--92--3631Chr08:22271159..22271183 (25 bp)
CTTGAGGCTTTTTTATTCACGTTGT
LOC_Os08g35560
Target Sequence 
ACAATCAATGGACGTGCCGTTCTTCCTCGCCTTCGCAATCATCGCGCTCCTGTCCAGGTACGTCCCCTTCGCGCTGCCGC
CGATGGCGCGGGACCTCCTCGCCGACAACTCCGCCGAGCCGGCGCGCGCCGCCAAGTGCGCGGTGTCGGTGGCCGTCGCC
GGGCTGATGCTGCTGGTGTCGCTGCAGTGCGGCGCCGGCGGCGAGCAGTACTGCCCCGACGTCAGGGTGGAGGGGAGGGC
GCTGTGGCTCAACTGCGCGGCGCTCTTCCTCGGCATGGTCGTCGGCGGCGTCGCGGTGGTGGTGATGCCGCCGCTCGCCG
CCGTGTCGCCGCTTGTCCAGGTGATGGTCGAACACCTGACCAGGTTCACGGAGACCATCGCGGTGACCGCGTTCGCGCAT
GACTTCTGCATCTTTATAAGCTCGTGAGGCTGAAACAATGAGGCGAGGAACCGAAGGCCATTTCTCCTTTGTTTTTCTTG
AGGCTTTTTTATTCACGTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54856.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis