Browse Element(s) Details


Os.49232.1.S1_x_at

Description gb:AK069363.1
DB_XREF= gi:32979387
TID=Os.49232.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49232 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023012G16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023012G16, full insert sequence.
FL= gb:AK069363.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3779011/11D-mannose binding lectin family protein, expressed
LOC_Os11g443908/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g355606/11expressed protein
LOC_Os01g404993/11D-mannose binding lectin family protein, expressed
LOC_Os08g131902/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g295601/11retrotransposon protein, putative, unclassified
LOC_Os06g411801/11hypothetical protein
LOC_Os05g424481/11retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os04g540501/11hypothetical protein
LOC_Os04g086201/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g37750OsAffx.18036.1.S1_at11/119+21747269..21747688hypothetical protein
LOC_Os09g37760Os.26925.1.S1_at11/119+21751269..21757050Bromodomain containing protein, expressed
LOC_Os09g37770OsAffx.6509.1.S1_at11/119+21759179..21759571hypothetical protein
LOC_Os09g37780OsAffx.30177.3.S1_at11/119+21761277..21764879D-mannose binding lectin family protein
LOC_Os09g37790Os.49232.1.S1_x_at11/119+21772267..21777539D-mannose binding lectin family protein, expressed
LOC_Os09g37790Os.56251.1.S1_x_at11/119+21772267..21777539D-mannose binding lectin family protein, expressed
LOC_Os09g37790OsAffx.23910.2.A1_at6/119+21772267..21777539D-mannose binding lectin family protein, expressed
LOC_Os09g37790Os.45982.1.A1_at1/119+21772267..21777539D-mannose binding lectin family protein, expressed
LOC_Os09g37790OsAffx.18435.1.S1_x_at1/119+21772267..21777539D-mannose binding lectin family protein, expressed
LOC_Os09g37800OsAffx.6510.1.S1_at11/119+21778729..21782005D-mannose binding lectin family protein
LOC_Os09g37810OsAffx.6511.1.S1_at11/119+21782574..21784157D-mannose binding lectin family protein
LOC_Os09g37820Os.35344.18.S1_x_at10/119+21785250..21790320transposon protein, putative, Mutator sub-class
LOC_Os09g37820Os.35344.3.S1_x_at10/119+21785250..21790320transposon protein, putative, Mutator sub-class
LOC_Os09g37820OsAffx.22940.5.S1_x_at2/119+21785250..21790320transposon protein, putative, Mutator sub-class
LOC_Os09g37830OsAffx.30178.1.S1_at11/119+21795432..21796306hypothetical protein
LOC_Os09g37840OsAffx.30180.4.S1_at11/119+21797604..21819928D-mannose binding lectin family protein
LOC_Os09g37840OsAffx.18038.1.S1_at11/119+21797604..21819928D-mannose binding lectin family protein
LOC_Os09g37840OsAffx.30180.4.S1_x_at11/119+21797604..21819928D-mannose binding lectin family protein
LOC_Os09g37840OsAffx.30180.2.S1_at1/119+21797604..21819928D-mannose binding lectin family protein
LOC_Os09g37840OsAffx.30180.1.S1_at1/119+21797604..21819928D-mannose binding lectin family protein
LOC_Os09g37840OsAffx.30180.3.S1_at1/119+21797604..21819928D-mannose binding lectin family protein
LOC_Os09g37840Os.10719.1.S1_at1/119+21797604..21819928D-mannose binding lectin family protein

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Gene Ontology Classification
GO idTypeName
GO:0004672molecular_functionprotein kinase activity
GO:0004675molecular_functiontransmembrane receptor protein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49232.1.S1_x_at--550--107144Chr11:25775855..25775879 (25 bp)
TTGGGAAAGGCTTTGTTGCGAACCT
NONE
Os.49232.1.S1_x_at--1081--22955Chr11:25775860..25775884 (25 bp)
AAAGGCTTTGTTGCGAACCTCCGAT
NONE
Os.49232.1.S1_x_at--618--9152Chr11:25775862..25775886 (25 bp)
AGGCTTTGTTGCGAACCTCCGATAC
NONE
Os.49232.1.S1_x_at--423--101951Chr11:25775866..25775890 (25 bp)
TTTGTTGCGAACCTCCGATACCGAC
NONE
Os.49232.1.S1_x_at--278--101149Chr11:25775870..25775894 (25 bp)
TTGCGAACCTCCGATACCGACGGGT
NONE
Os.49232.1.S1_x_at--185--43150Chr11:25775872..25775896 (25 bp)
GCGAACCTCCGATACCGACGGGTGT
NONE
Os.49232.1.S1_x_at--562--76954Chr11:25775891..25775915 (25 bp)
GGGTGTTCGGAATAAGTTCGTATCT
NONE
Os.49232.1.S1_x_at--603--39357Chr11:24946746..24946770 (25 bp)
CGGAATAAGTTCGTATCTTGTGGGT
NONE
Os.49232.1.S1_x_at--976--475131Chr12:22876750..22876774 (25 bp)
GCTGCTGGGCAGCTGGACTCTGGGA
NONE
Os.49232.1.S1_x_at--364--481126Chr12:22876794..22876848 (25 bp)
GCTCTGGGAGCCGATAAGTAATGAT
NONE
Os.49232.1.S1_x_at--761--2216Chr11:25776345..25776367 (23 bp)
ACAAGTCTCTTTTCGATCCAAACTC
NONE
Target Sequence 
TTGGGAAAGGCTTTGTTGCGAACCTCCGATACCGACGGGTGTTCGGAATAAGTTCGTATCTTGTGGGTAAAGTGTACCCC
TCTGCAGAGGTTAACTAACTGTTCGAACAGCCGTGCCCACGGTCATGGGNGGATGTGAGGTGGTTCCNGTTGCGTAGATT
TGTTTGCCTGTNCTTTGTGAAAAGTTGTTGTGGTGTNGGAATCGTAACCAGAATCAGCCTANGTGGCAGATGGATNACCT
GAGTGGTCAGAAACGAATCTGTGTGATTCGGGATGTCTNCGGGCATCATAGACTAGGCTTCCCGAGTNGAAGCGGNTTGN
TNTGCTGCTGGGCAGCTGGACTCTGGGAGTCCGAGAAAATGAAAAAGGCTCTGGGAGCCNNTTAATCAAGTGAAANTGGC
TCTGGGAGCCGATAAGTAATGATNTGACCCGGGAGGTCGGTACATTACCANTTGANTTNTTNGAAAAGCATCTCTTAAGN
CGAATCGAGACACAAGTCTCTTTTCGATCCAAACTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49232.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis