Browse Element(s) Details


OsAffx.18435.1.S1_x_at

Description tigr:9638.m02471
TID=OsAffx.18435.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g146903/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g264601/11zinc finger family protein, putative, expressed
LOC_Os12g312801/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g404991/11D-mannose binding lectin family protein, expressed
LOC_Os05g424481/11retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os10g153401/11retrotransposon protein, putative, unclassified, expressed
LOC_Os09g377901/11D-mannose binding lectin family protein, expressed
LOC_Os01g139801/11transposon protein, putative, unclassified
LOC_Os03g363301/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g218401/11retrotransposon protein, putative, unclassified
LOC_Os11g443901/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g131901/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g14650OsAffx.29199.1.S1_at10/118+8802883..8804027hypothetical protein
LOC_Os08g14650OsAffx.24469.1.S1_x_at1/118+8802883..8804027hypothetical protein
LOC_Os08g14660Os.53445.1.S1_at11/118+8806492..8810357SET domain containing protein, expressed
LOC_Os08g14670NANA8+8816273..8824399transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g14679NANA8+8826417..8826784NA
LOC_Os08g14690Os.47463.1.S1_x_at4/118+8827915..8829859transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g14690Os.14491.2.S1_x_at4/118+8827915..8829859transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g14690OsAffx.18435.1.S1_x_at3/118+8827915..8829859transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g14690Os.36736.1.S1_x_at2/118+8827915..8829859transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g14690Os.36736.1.S1_at1/118+8827915..8829859transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g14700Os.14978.1.S1_a_at4/118+8830912..8833011Glycosyl hydrolases family 17 protein
LOC_Os08g14710OsAffx.16999.1.S1_at11/118+8834625..8837728hypothetical protein
LOC_Os08g14710Os.55288.1.S1_at1/118+8834625..8837728hypothetical protein
LOC_Os08g14720OsAffx.29200.1.S1_at11/118+8839134..8839718hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0004672molecular_functionprotein kinase activity
GO:0004675molecular_functiontransmembrane receptor protein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18435.1.S1_x_at--514--10452Chr11:8666525..8666907 (25 bp)
TTACCTACTTCTGTTTTTGGAATCT
NONE
OsAffx.18435.1.S1_x_at--498--1751Chr06:14626433..14626453 (21 bp)
ACCTACTTCTGTTTTTGGAATCTAT
NONE
OsAffx.18435.1.S1_x_at--558--37347Chr12:18796630..18796755 (25 bp)
CTACTTCTGTTTTTGGAATCTATGA
LOC_Os12g31280
OsAffx.18435.1.S1_x_at--593--37913Chr11:24042171..24042293 (25 bp)
CTGTTTTTGGAATCTATGAGTTCGT
NONE
OsAffx.18435.1.S1_x_at--705--82122Chr12:18873515..18873534 (20 bp)
GGAATCTATGAGTTCGTGTGTACCA
NONE
OsAffx.18435.1.S1_x_at--274--3074Chr10:14800297..14800318 (22 bp)
AATCTATGAGTTCGTGTGTACCAAA
NONE
OsAffx.18435.1.S1_x_at--145--3471Chr10:14800166..14800286 (25 bp)
CAGGGAAATGGTACGCTGGACTCTG
NONE
OsAffx.18435.1.S1_x_at--846--2291Chr10:14800161..14800281 (25 bp)
AAATGGTACGCTGGACTCTGGGAGT
NONE
OsAffx.18435.1.S1_x_at--154--2971Chr10:14800160..14800280 (25 bp)
AATGGTACGCTGGACTCTGGGAGTC
NONE
OsAffx.18435.1.S1_x_at--1162--811Chr10:14800159..14800279 (25 bp)
ATGGTACGCTGGACTCTGGGAGTCC
NONE
OsAffx.18435.1.S1_x_at--94--995130Chr12:22876761..22876782 (22 bp)
TACGCTGGACTCTGGGAGTCCGAGA
NONE
Target Sequence 
TTACCTACTTCTGTTTTTGGAATCTATGAGTTCGTGTGTACCAAACTACTTGATCCAGGGAAATGGTACGCTGGACTCTG
GGAGTCCGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18435.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis