Browse Element(s) Details


Os.14978.1.S1_a_at

Description gb:AK066237.1
DB_XREF= gi:32976255
TID=Os.14978.1
CNT=22
FEA=FLmRNA
TIER=FL+Stack
STK=8
UG=Os.14978 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013107E22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013058G09, full insert sequence.
FL= gb:AK066237.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3551011/11Glycosyl hydrolases family 17 protein, expressed
LOC_Os08g147004/11Glycosyl hydrolases family 17 protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g35470OsAffx.16566.1.S1_at11/117+21211957..21212657hypothetical protein
LOC_Os07g35480Os.6776.1.S1_at11/117+21221578..21224176Glycosyl hydrolases family 17 protein, expressed
LOC_Os07g35490OsAffx.5534.1.S1_at11/117+21228223..21228678hypothetical protein
LOC_Os07g35500Os.49928.1.S1_at11/117+21230447..21234094expressed protein
LOC_Os07g35510Os.14978.1.S1_a_at11/117+21236583..21239569Glycosyl hydrolases family 17 protein, expressed
LOC_Os07g35520Os.7086.1.S1_s_at11/117+21243181..21246138Glycosyl hydrolases family 17 protein, expressed
LOC_Os07g35520OsAffx.16567.1.S1_at11/117+21243181..21246138Glycosyl hydrolases family 17 protein, expressed
LOC_Os07g35520Os.7086.1.S1_at11/117+21243181..21246138Glycosyl hydrolases family 17 protein, expressed
LOC_Os07g35530Os.33878.1.S1_at6/117+21260093..21262569hypothetical protein
LOC_Os07g35530Os.27102.1.S1_x_at1/117+21260093..21262569hypothetical protein
LOC_Os07g35540OsAffx.5535.1.S1_x_at11/117+21264348..21267617Protein kinase domain containing protein, expressed
LOC_Os07g35540OsAffx.5535.1.S1_at11/117+21264348..21267617Protein kinase domain containing protein, expressed
LOC_Os07g35540Os.31858.2.S1_x_at1/117+21264348..21267617Protein kinase domain containing protein, expressed
LOC_Os07g35540Os.26816.1.A1_s_at1/117+21264348..21267617Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0031225cellular_componentanchored to membrane
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14978.1.S1_a_at--715--3851Chr07:21237055..21237079 (25 bp)
CTGACACTAAGGTAGCACACGCGAC
LOC_Os07g35510
Os.14978.1.S1_a_at--75--9471Chr07:21237022..21237046 (25 bp)
TCAACGATTTTTACCAGACCACCGG
LOC_Os07g35510
Os.14978.1.S1_a_at--81--4251Chr07:21236997..21237021 (25 bp)
CCGGGCTAGTGGATCGTGTGACTTT
LOC_Os07g35510
Os.14978.1.S1_a_at--162--10691Chr07:21236974..21236998 (25 bp)
TTGCCGGTGCTGCTTCTATTGTCAA
LOC_Os07g35510
Os.14978.1.S1_a_at--392--4912Chr08:8832732..8832756 (25 bp)
GCTTCTATTGTCAACCAGCAACCAA
LOC_Os08g14700
Os.14978.1.S1_a_at--153--2252Chr08:8832908..8832932 (25 bp)
AAATAGGAAACTGCGTGCTCCCACC
LOC_Os08g14700
Os.14978.1.S1_a_at--436--4712Chr08:8832948..8832967 (20 bp)
GCTGGGACAGAACAAACTGCAATTG
LOC_Os08g14700
Os.14978.1.S1_a_at--309--1252Chr08:8832969..8832993 (25 bp)
AGATCAATCGACTGCAAACTTACCA
LOC_Os08g14700
Os.14978.1.S1_a_at--614--3272Chr08:8832995..8833019 (25 bp)
CAACAGCTTGGCAGTGAGGATGGAT
NONE
Os.14978.1.S1_a_at--37--3091Chr07:21236686..21236710 (25 bp)
AATCACTTCATATTTTTCTGCAGAG
LOC_Os07g35510
Os.14978.1.S1_a_at--1033--2972Chr08:8833099..8833123 (25 bp)
AATGTACCGTTCACTCCTGTTGAAT
NONE
Target Sequence 
CTGACACTAAGGTAGCACACGCGACCTATGCATTCAACGATTTTTACCAGACCACCGGCCGGGCTAGTGGATCGTGTGAC
TTTGCCGGTGCTGCTTCTATTGTCAACCAGCAACCAAAAATAGGAAACTGCGTGCTCCCACCAAACAATGCTGGGACAGA
ACAAACTGCAATTGAAGATCAATCGACTGCAAACTTACCAGCAACAGCTTGGCAGTGAGGATGGATTAAAGAATCACTTC
ATATTTTTCTGCAGAGAAAAAAATAATGGTACCATTAATAATTAGTTGGGATTGAAGAGACGAATAAATGTACCGTTCAC
TCCTGTTGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14978.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis