Browse Element(s) Details


OsAffx.5534.1.S1_at

Description tigr:9635.m03506
TID=OsAffx.5534.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3549011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g35460NANA7+21203594..21207115retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g35470OsAffx.16566.1.S1_at11/117+21211957..21212657hypothetical protein
LOC_Os07g35480Os.6776.1.S1_at11/117+21221578..21224176Glycosyl hydrolases family 17 protein, expressed
LOC_Os07g35490OsAffx.5534.1.S1_at11/117+21228223..21228678hypothetical protein
LOC_Os07g35500Os.49928.1.S1_at11/117+21230447..21234094expressed protein
LOC_Os07g35510Os.14978.1.S1_a_at11/117+21236583..21239569Glycosyl hydrolases family 17 protein, expressed
LOC_Os07g35520Os.7086.1.S1_s_at11/117+21243181..21246138Glycosyl hydrolases family 17 protein, expressed
LOC_Os07g35520OsAffx.16567.1.S1_at11/117+21243181..21246138Glycosyl hydrolases family 17 protein, expressed
LOC_Os07g35520Os.7086.1.S1_at11/117+21243181..21246138Glycosyl hydrolases family 17 protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5534.1.S1_at--974--10031Chr07:21228623..21228647 (25 bp)
TAGTTCCGGCGCATTGGCGCAATGC
LOC_Os07g35490
OsAffx.5534.1.S1_at--917--3191Chr07:21228604..21228628 (25 bp)
CAATGCGGGCACTGCGAAAGATCCA
LOC_Os07g35490
OsAffx.5534.1.S1_at--718--9131Chr07:21228592..21228616 (25 bp)
TGCGAAAGATCCAGCGTCCACCGGC
LOC_Os07g35490
OsAffx.5534.1.S1_at--827--711Chr07:21228563..21228587 (25 bp)
ATGATCTCCGTTGCTCGGGCCTCAG
LOC_Os07g35490
OsAffx.5534.1.S1_at--989--4391Chr07:21228522..21228546 (25 bp)
GCCACAGATCGCTTAGTCCTCGTGA
LOC_Os07g35490
OsAffx.5534.1.S1_at--524--9451Chr07:21228475..21228499 (25 bp)
TCGGCAGCGATCAGCACATCATCAT
LOC_Os07g35490
OsAffx.5534.1.S1_at--1124--5431Chr07:21228439..21228463 (25 bp)
GAACGCCAAGGCCAGACTCAATTGC
LOC_Os07g35490
OsAffx.5534.1.S1_at--1000--4411Chr07:21228429..21228453 (25 bp)
GCCAGACTCAATTGCCACGAAGATG
LOC_Os07g35490
OsAffx.5534.1.S1_at--471--10691Chr07:21228418..21228442 (25 bp)
TTGCCACGAAGATGGACTACTCCAT
LOC_Os07g35490
OsAffx.5534.1.S1_at--570--8791Chr07:21228298..21228322 (25 bp)
TGTTCAGCGAGATGTGAGGCACCAT
LOC_Os07g35490
OsAffx.5534.1.S1_at--253--8691Chr07:21228286..21228310 (25 bp)
TGTGAGGCACCATACGCGTGAAATT
LOC_Os07g35490
Target Sequence 
TAGTTCCGGCGCATTGGCGCAATGCGGGCACTGCGAAAGATCCAGCGTCCACCGGCCGGCATGATCTCCGTTGCTCGGGC
CTCAGGTGGCCAGGTGCCACTGCCACAGATCGCTTAGTCCTCGTGACCTCGCCCATGTCCGTTGGCCATCGGCAGCGATC
AGCACATCATCATCGAGAAGACGAGAACGCCAAGGCCAGACTCAATTGCCACGAAGATGGACTACTCCATGGTGACATCG
TGGCCGCCGGCGACGGCAGCTTGCACGGAGAGGAAGAGGGTGAGCAAGGCGGCGCCGATGGAGGAGGAGGGAGGTGGCGG
TGGCGTGTTCAGCGAGATGTGAGGCACCATACGCGTGAAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5534.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis