Browse Element(s) Details


OsAffx.16567.1.S1_at

Description tigr:9635.m03509
TID=OsAffx.16567.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3552011/11Glycosyl hydrolases family 17 protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g35480Os.6776.1.S1_at11/117+21221578..21224176Glycosyl hydrolases family 17 protein, expressed
LOC_Os07g35490OsAffx.5534.1.S1_at11/117+21228223..21228678hypothetical protein
LOC_Os07g35500Os.49928.1.S1_at11/117+21230447..21234094expressed protein
LOC_Os07g35510Os.14978.1.S1_a_at11/117+21236583..21239569Glycosyl hydrolases family 17 protein, expressed
LOC_Os07g35520Os.7086.1.S1_s_at11/117+21243181..21246138Glycosyl hydrolases family 17 protein, expressed
LOC_Os07g35520OsAffx.16567.1.S1_at11/117+21243181..21246138Glycosyl hydrolases family 17 protein, expressed
LOC_Os07g35520Os.7086.1.S1_at11/117+21243181..21246138Glycosyl hydrolases family 17 protein, expressed
LOC_Os07g35530Os.33878.1.S1_at6/117+21260093..21262569hypothetical protein
LOC_Os07g35530Os.27102.1.S1_x_at1/117+21260093..21262569hypothetical protein
LOC_Os07g35540OsAffx.5535.1.S1_x_at11/117+21264348..21267617Protein kinase domain containing protein, expressed
LOC_Os07g35540OsAffx.5535.1.S1_at11/117+21264348..21267617Protein kinase domain containing protein, expressed
LOC_Os07g35540Os.31858.2.S1_x_at1/117+21264348..21267617Protein kinase domain containing protein, expressed
LOC_Os07g35540Os.26816.1.A1_s_at1/117+21264348..21267617Protein kinase domain containing protein, expressed
LOC_Os07g35550NANA7+21269020..21269436transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0031225cellular_componentanchored to membrane
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16567.1.S1_at--37--2911Chr07:21244347..21244371 (25 bp)
AAGGTTTACGAGGTTGATTTTCATG
LOC_Os07g35520
OsAffx.16567.1.S1_at--40--10471Chr07:21244342..21244366 (25 bp)
TTACGAGGTTGATTTTCATGGTGGT
LOC_Os07g35520
OsAffx.16567.1.S1_at--134--8631Chr07:21244324..21244348 (25 bp)
TGGTGGTGGTATTTGTCCCACCAAG
LOC_Os07g35520
OsAffx.16567.1.S1_at--1112--7711Chr07:21244320..21244344 (25 bp)
GGTGGTATTTGTCCCACCAAGGCGA
LOC_Os07g35520
OsAffx.16567.1.S1_at--373--8571Chr07:21244318..21244342 (25 bp)
TGGTATTTGTCCCACCAAGGCGAGC
LOC_Os07g35520
OsAffx.16567.1.S1_at--32--6871Chr07:21244316..21244340 (25 bp)
GTATTTGTCCCACCAAGGCGAGCTG
LOC_Os07g35520
OsAffx.16567.1.S1_at--54--10211Chr07:21244315..21244339 (25 bp)
TATTTGTCCCACCAAGGCGAGCTGG
LOC_Os07g35520
OsAffx.16567.1.S1_at--458--211Chr07:21244314..21244338 (25 bp)
ATTTGTCCCACCAAGGCGAGCTGGT
LOC_Os07g35520
OsAffx.16567.1.S1_at--461--4071Chr07:21244298..21244322 (25 bp)
CGAGCTGGTGCGTGGCAAATTTAGC
LOC_Os07g35520
OsAffx.16567.1.S1_at--149--3911Chr07:21244294..21244318 (25 bp)
CTGGTGCGTGGCAAATTTAGCTGTG
LOC_Os07g35520
OsAffx.16567.1.S1_at--898--10431Chr07:21244278..21244302 (25 bp)
TTAGCTGTGGGGAATTCCCGGCTGC
LOC_Os07g35520
Target Sequence 
AAGGTTTACGAGGTTGATTTTCATGGTGGTGGTATTTGTCCCACCAAGGCGAGCTGGTGCGTGGCAAATTTAGCTGTGGG
GAATTCCCGGCTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16567.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis