Browse Element(s) Details


Os.26816.1.A1_s_at

Description gb:CB633388
DB_XREF= gi:29628377
DB_XREF=OSIIEb12D09.r
CLONE=OSIIEb12D09
TID=Os.26816.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.26816 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_194047.1 (A.thaliana) putative protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3541011/11Protein kinase domain containing protein, expressed
LOC_Os07g355401/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g35350Os.25578.1.S1_at11/117+21148322..21150633Glycosyl hydrolases family 17 protein, expressed
LOC_Os07g35350Os.57525.1.S1_x_at10/117+21148322..21150633Glycosyl hydrolases family 17 protein, expressed
LOC_Os07g35360OsAffx.16565.1.S1_at11/117+21152391..21152960hypothetical protein
LOC_Os07g35370Os.15426.1.S1_at11/117+21153702..21157102Protein kinase domain containing protein, expressed
LOC_Os07g35380Os.31858.2.S1_at1/117+21159451..21162153Protein kinase domain containing protein, expressed
LOC_Os07g35390Os.19584.1.A1_at11/117+21165567..21168984Protein kinase domain containing protein, expressed
LOC_Os07g35390Os.48695.1.S1_x_at1/117+21165567..21168984Protein kinase domain containing protein, expressed
LOC_Os07g35400NANA7+21170504..21170956hypothetical protein
LOC_Os07g35410Os.26816.1.A1_s_at11/117+21173358..21176868Protein kinase domain containing protein, expressed
LOC_Os07g35410Os.26816.2.S1_s_at11/117+21173358..21176868Protein kinase domain containing protein, expressed
LOC_Os07g35410OsAffx.5535.1.S1_x_at1/117+21173358..21176868Protein kinase domain containing protein, expressed
LOC_Os07g35410Os.31858.2.S1_x_at1/117+21173358..21176868Protein kinase domain containing protein, expressed
LOC_Os07g35420Os.43567.1.S1_x_at3/117+21180252..21180786transposon protein, putative, unclassified
LOC_Os07g35420Os.38172.1.S1_x_at3/117+21180252..21180786transposon protein, putative, unclassified
LOC_Os07g35430OsAffx.22848.3.S1_x_at3/117+21183325..21186369retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g35440Os.24831.2.S1_at5/117+21191497..21196338retrotransposon protein, putative, unclassified
LOC_Os07g35440Os.55127.1.S1_at1/117+21191497..21196338retrotransposon protein, putative, unclassified
LOC_Os07g35440Os.53142.1.S1_at1/117+21191497..21196338retrotransposon protein, putative, unclassified
LOC_Os07g35450Os.53142.1.S1_at1/117+21198852..21199319transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26816.1.A1_s_at--247--10191Chr07:21176173..21176197 (25 bp)
TATATGGCACCCGAGTACGTAGCAG
LOC_Os07g35410
Os.26816.1.A1_s_at--822--8171Chr07:21176270..21176294 (25 bp)
GGAACTCCGATTCTGGTGATCATGA
LOC_Os07g35410
Os.26816.1.A1_s_at--714--7351Chr07:21176299..21176438 (25 bp)
GTGAATCTCCTGACTGATGTCTGGA
LOC_Os07g35410
Os.26816.1.A1_s_at--550--3191Chr07:21176477..21176501 (25 bp)
CAATCGCTTGATGGGTACTCTCGAA
LOC_Os07g35410
Os.26816.1.A1_s_at--77--6031Chr07:21176558..21176582 (25 bp)
GAGAGGCCTCATATATCATCTGTCA
LOC_Os07g35410
Os.26816.1.A1_s_at--299--10251Chr07:21176642..21176666 (25 bp)
TTTGGGACAGAATCGGCTTCCTCTT
LOC_Os07g35410
Os.26816.1.A1_s_at--573--9531Chr07:21176666..21176690 (25 bp)
TCTACATCATGTGGGCAACGCAGCT
LOC_Os07g35410
Os.26816.1.A1_s_at--739--2592Chr07:21176682..21176706 (25 bp)
AACGCAGCTATGTGTATGACCGCTA
LOC_Os07g35410
Os.26816.1.A1_s_at--237--831Chr07:21176706..21176730 (25 bp)
ATGGTTTTGCTAGCGTTTCTGTAAA
LOC_Os07g35410
Os.26816.1.A1_s_at--636--2291Chr07:21176728..21176752 (25 bp)
AAATGATGTTACACTCACCGAGCCA
LOC_Os07g35410
Os.26816.1.A1_s_at--259--1351Chr07:21176806..21176830 (25 bp)
AGAGTACCGTACTGTGTCCATACAC
LOC_Os07g35410
Target Sequence 
TATATGGCACCCGAGTACGTAGCAGACGGAAATGTGTCAACCAAGATAGACATTTTTAGCTTTGGTGTGTTGGTCCTTGA
AATTGTGATGAGGAGAAGGAACTCCGATTCTGGTGATCATGATAATGTGAATCTCCTGACTGATGTCTGGAATAGCTGGA
CAAAAGGGACAATTTCACAATTCATTGACCAATCGCTTGATGGGTACTCTCGAAGCCAAGCCNTGCGATGCATCCACATT
GGGCTATTGTGTGTCCAGCCGGACCCTGNTGAGAGGCCTCATATATCATCTGTCATTTTCATGTTAACCAGGGAAAACAT
GGAGCTTCAGCCACCAGCACAACCTGCATTCTTCTTTGGGACAGAATCGGCTTCCTCTTCTACATCATGTGGGCAACGCA
GCTATGTGTATGACCGCTATGGTTTTGCTAGCGTTTCTGTAAATGATGTTACACTCACCGAGCCATATCCTAGATGACTG
GTCTTACTAGGAGGTCACAATGCGAATGGGTAAAAGTCAGAGTACCGTACTGTGTCCATACAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26816.1.A1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis