Browse Element(s) Details


Os.25578.1.S1_at

Description gb:AK102329.1
DB_XREF= gi:32987538
TID=Os.25578.1
CNT=29
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.25578 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033090M12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033090M12, full insert sequence.
FL= gb:AK102329.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3535011/11Glycosyl hydrolases family 17 protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g35290Os.26323.1.S1_at11/117+21119632..21123563Protein kinase domain containing protein, expressed
LOC_Os07g35290Os.40420.1.S1_x_at4/117+21119632..21123563Protein kinase domain containing protein, expressed
LOC_Os07g35300Os.40420.1.S1_x_at11/117+21126918..21130816serine/threonine kinase, putative, expressed
LOC_Os07g35300Os.26323.1.S1_at1/117+21126918..21130816serine/threonine kinase, putative, expressed
LOC_Os07g35310Os.49818.1.S1_s_at5/117+21131765..21133318Serine/threonine-protein kinase receptor precursor, putative
LOC_Os07g35320NANA7+21137419..21138921serine/threonine kinase, putative
LOC_Os07g35330Os.26914.1.S1_at11/117+21139268..21142585receptor-like protein kinase homolog RK20-1, putative, expressed
LOC_Os07g35340Os.31858.3.S1_x_at11/117+21144849..21148033Protein kinase domain containing protein, expressed
LOC_Os07g35340Os.31858.2.S1_at11/117+21144849..21148033Protein kinase domain containing protein, expressed
LOC_Os07g35340Os.31858.2.S1_x_at10/117+21144849..21148033Protein kinase domain containing protein, expressed
LOC_Os07g35340Os.31858.1.S1_at10/117+21144849..21148033Protein kinase domain containing protein, expressed
LOC_Os07g35340OsAffx.5535.1.S1_x_at1/117+21144849..21148033Protein kinase domain containing protein, expressed
LOC_Os07g35350Os.25578.1.S1_at11/117+21148322..21150633Glycosyl hydrolases family 17 protein, expressed
LOC_Os07g35350Os.57525.1.S1_x_at10/117+21148322..21150633Glycosyl hydrolases family 17 protein, expressed
LOC_Os07g35360OsAffx.16565.1.S1_at11/117+21152391..21152960hypothetical protein
LOC_Os07g35370Os.15426.1.S1_at11/117+21153702..21157102Protein kinase domain containing protein, expressed
LOC_Os07g35380Os.31858.2.S1_at1/117+21159451..21162153Protein kinase domain containing protein, expressed
LOC_Os07g35390Os.19584.1.A1_at11/117+21165567..21168984Protein kinase domain containing protein, expressed
LOC_Os07g35390Os.48695.1.S1_x_at1/117+21165567..21168984Protein kinase domain containing protein, expressed
LOC_Os07g35400NANA7+21170504..21170956hypothetical protein
LOC_Os07g35410Os.26816.1.A1_s_at11/117+21173358..21176868Protein kinase domain containing protein, expressed
LOC_Os07g35410Os.26816.2.S1_s_at11/117+21173358..21176868Protein kinase domain containing protein, expressed
LOC_Os07g35410OsAffx.5535.1.S1_x_at1/117+21173358..21176868Protein kinase domain containing protein, expressed
LOC_Os07g35410Os.31858.2.S1_x_at1/117+21173358..21176868Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0031225cellular_componentanchored to membrane
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info

Probe NameHit(s)LocationSequenceTIGR Locus
Os.25578.1.S1_at--675--3971Chr07:21149101..21149125 (25 bp)
CGGTGCTGCTTACATCGTCTACAAG
LOC_Os07g35350
Os.25578.1.S1_at--701--371Chr07:21148945..21149098 (25 bp)
ATCACCAAGCATCTGTGACCCGAAC
LOC_Os07g35350
Os.25578.1.S1_at--469--1971Chr07:21148838..21148862 (25 bp)
ACTGCAGTGCCATCCAGCCTGGTGG
LOC_Os07g35350
Os.25578.1.S1_at--1070--4351Chr07:21148825..21148849 (25 bp)
CCAGCCTGGTGGACGGTGCTTTGAT
LOC_Os07g35350
Os.25578.1.S1_at--1139--9811Chr07:21148798..21148822 (25 bp)
TAACACCAAGGTGGCGCATGCGACC
LOC_Os07g35350
Os.25578.1.S1_at--128--671Chr07:21148763..21148787 (25 bp)
ATGACTATTACCAGACTGCCGGCAG
LOC_Os07g35350
Os.25578.1.S1_at--636--7491Chr07:21148715..21148739 (25 bp)
GTGGTGCTGCTTCCATCGTCAACCA
LOC_Os07g35350
Os.25578.1.S1_at--63--9411Chr07:21148621..21148724 (25 bp)
TCGTCAACCAGGCACCGAGAATTGG
LOC_Os07g35350
Os.25578.1.S1_at--871--3091Chr07:21148495..21148519 (25 bp)
AATAGCCCCGTATTACTGTGCTGAG
LOC_Os07g35350
Os.25578.1.S1_at--859--9811Chr07:21148400..21148424 (25 bp)
TAAAATTCCTTTCTACACAATGCAG
LOC_Os07g35350
Os.25578.1.S1_at--1088--2531Chr07:21148359..21148383 (25 bp)
AACTCCATCAAACTCCTAGAGTGCA
LOC_Os07g35350
Target Sequence
CGGTGCTGCTTACATCGTCTACAAGCCATCACCAAGCATCTGTGACCCGAACCCGAGTTGGTGCGTGGCGAACGCAGAGG
TCGGGGACATGCGGTTACAGGCAGCACTAGACTATGCATGCAGTAGCTGCGCAGACTGCAGTGCCATCCAGCCTGGTGGA
CGGTGCTTTGATCCTAACACCAAGGTGGCGCATGCGACCTATGCATTCAATGACTATTACCAGACTGCCGGCAGGGCAAG
TGGCTCGTGTGACTTTGGTGGTGCTGCTTCCATCGTCAACCAGGCACCGAGAATTGGAAACTGCGTACTCCCACCAAGCA
AGACTTCTTCAATGAACATATTTTACTGAAGACCGAAGGTAGCTTACCAGAAGCTCAATAATGAAAGTGGGATTGAAGAA
TAGCCCCGTATTACTGTGCTGAGAAAATAAGGATGATATTGTATTTAGATTCTGGTTAAGAATTTTAAGTGTATTCCGTT
CGCTCTTGTTGAATAAAATTCCTTTCTACACAATGCAGAATAAAATGTACAATAAACTCCATCAAACTCCTAGAGTGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25578.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis