Browse Element(s) Details


Os.57525.1.S1_x_at

Description gb:D25236.1
DB_XREF= gi:433213
TID=Os.57525.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.57525 (NCBI UniGene Cluster)
UG_TITLE=AD79 mRNA for 1-3,1-4-beta-glucanase, partial cds
DEF=Oryza sativa AD79 mRNA for 1-3,1-4-beta-glucanase, partial cds.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3535010/11Glycosyl hydrolases family 17 protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g35290Os.26323.1.S1_at11/117+21119632..21123563Protein kinase domain containing protein, expressed
LOC_Os07g35290Os.40420.1.S1_x_at4/117+21119632..21123563Protein kinase domain containing protein, expressed
LOC_Os07g35300Os.40420.1.S1_x_at11/117+21126918..21130816serine/threonine kinase, putative, expressed
LOC_Os07g35300Os.26323.1.S1_at1/117+21126918..21130816serine/threonine kinase, putative, expressed
LOC_Os07g35310Os.49818.1.S1_s_at5/117+21131765..21133318Serine/threonine-protein kinase receptor precursor, putative
LOC_Os07g35320NANA7+21137419..21138921serine/threonine kinase, putative
LOC_Os07g35330Os.26914.1.S1_at11/117+21139268..21142585receptor-like protein kinase homolog RK20-1, putative, expressed
LOC_Os07g35340Os.31858.3.S1_x_at11/117+21144849..21148033Protein kinase domain containing protein, expressed
LOC_Os07g35340Os.31858.2.S1_at11/117+21144849..21148033Protein kinase domain containing protein, expressed
LOC_Os07g35340Os.31858.2.S1_x_at10/117+21144849..21148033Protein kinase domain containing protein, expressed
LOC_Os07g35340Os.31858.1.S1_at10/117+21144849..21148033Protein kinase domain containing protein, expressed
LOC_Os07g35340OsAffx.5535.1.S1_x_at1/117+21144849..21148033Protein kinase domain containing protein, expressed
LOC_Os07g35350Os.25578.1.S1_at11/117+21148322..21150633Glycosyl hydrolases family 17 protein, expressed
LOC_Os07g35350Os.57525.1.S1_x_at10/117+21148322..21150633Glycosyl hydrolases family 17 protein, expressed
LOC_Os07g35360OsAffx.16565.1.S1_at11/117+21152391..21152960hypothetical protein
LOC_Os07g35370Os.15426.1.S1_at11/117+21153702..21157102Protein kinase domain containing protein, expressed
LOC_Os07g35380Os.31858.2.S1_at1/117+21159451..21162153Protein kinase domain containing protein, expressed
LOC_Os07g35390Os.19584.1.A1_at11/117+21165567..21168984Protein kinase domain containing protein, expressed
LOC_Os07g35390Os.48695.1.S1_x_at1/117+21165567..21168984Protein kinase domain containing protein, expressed
LOC_Os07g35400NANA7+21170504..21170956hypothetical protein
LOC_Os07g35410Os.26816.1.A1_s_at11/117+21173358..21176868Protein kinase domain containing protein, expressed
LOC_Os07g35410Os.26816.2.S1_s_at11/117+21173358..21176868Protein kinase domain containing protein, expressed
LOC_Os07g35410OsAffx.5535.1.S1_x_at1/117+21173358..21176868Protein kinase domain containing protein, expressed
LOC_Os07g35410Os.31858.2.S1_x_at1/117+21173358..21176868Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0031225cellular_componentanchored to membrane
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57525.1.S1_x_at--590--9991Chr07:21150515..21150539 (25 bp)
TAGCCACCGCATTACCGTTGCTCTT
LOC_Os07g35350
Os.57525.1.S1_x_at--83--3811Chr07:21150367..21150511 (25 bp)
CTCCCATGCAGATGCGGGCGAGTTG
LOC_Os07g35350
Os.57525.1.S1_x_at--634--1071Chr07:21150327..21150351 (25 bp)
AGGGACGCGGACAATCTGATGGACC
LOC_Os07g35350
Os.57525.1.S1_x_at--334--8871Chr07:21150311..21150335 (25 bp)
TGATGGACCCGCAATCCGTGGTGAG
LOC_Os07g35350
Os.57525.1.S1_x_at--425--3031Chr07:21150299..21150323 (25 bp)
AATCCGTGGTGAGCCTTCTCAGGGC
LOC_Os07g35350
Os.57525.1.S1_x_at--183--10591Chr07:21150284..21150308 (25 bp)
TTCTCAGGGCGAACGGCATCACGAT
LOC_Os07g35350
Os.57525.1.S1_x_at--846--811Chr07:21150261..21150285 (25 bp)
ATGGTGAGGATCTTCGACGCCGACC
LOC_Os07g35350
Os.57525.1.S1_x_at--868--1031NONE
AGGTCGCTGGCGAACACCGGCATCA
NONE
Os.57525.1.S1_x_at--271--9731Chr07:21150203..21150227 (25 bp)
TCAAGGTGATGGTGGCGCTACCCAA
LOC_Os07g35350
Os.57525.1.S1_x_at--776--8451Chr07:21150191..21150215 (25 bp)
TGGCGCTACCCAACACCGATCTGGG
LOC_Os07g35350
Os.57525.1.S1_x_at--458--8551Chr07:21150128..21150152 (25 bp)
TGGAGAGCAGCGTGGTGCCCTACTA
LOC_Os07g35350
Target Sequence 
TAGCCACCGCATTACCGTTGCTCTTTCTCTCCCATGCAGATGCGGGCGAGTTGGGCGTGTGCTACGGGAGGGACGCGGAC
AATCTGATGGACCCGCAATCCGTGGTGAGCCTTCTCAGGGCGAACGGCATCACGATGGTGAGGATCTTCGACGCCGACCC
GGGGATGCTGAGGTCGCTGGCGAACACCGGCATCAAGGTGATGGTGGCGCTACCCAACACCGATCTGGGCTCCGCCGGCT
GGGATCCGAGCTACGNACAGAGGTGGGTGGAGAGCAGCGTGGTGCCCTACTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57525.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis