Browse Element(s) Details

Os.15426.1.S1_at

Description

gb:AK103518.1
DB_XREF= gi:32988727
TID=Os.15426.1
CNT=16
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.15426 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033131H17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033131H17, full insert sequence.
FL= gb:AK103518.1 gb:AK102249.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os07g35370	11/11	Protein kinase domain containing protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os07g35300	Os.40420.1.S1_x_at	11/11	7	+	21126918..21130816	serine/threonine kinase, putative, expressed
LOC_Os07g35300	Os.26323.1.S1_at	1/11	7	+	21126918..21130816	serine/threonine kinase, putative, expressed
LOC_Os07g35310	Os.49818.1.S1_s_at	5/11	7	+	21131765..21133318	Serine/threonine-protein kinase receptor precursor, putative
LOC_Os07g35320	NA	NA	7	+	21137419..21138921	serine/threonine kinase, putative
LOC_Os07g35330	Os.26914.1.S1_at	11/11	7	+	21139268..21142585	receptor-like protein kinase homolog RK20-1, putative, expressed
LOC_Os07g35340	Os.31858.3.S1_x_at	11/11	7	+	21144849..21148033	Protein kinase domain containing protein, expressed
LOC_Os07g35340	Os.31858.2.S1_at	11/11	7	+	21144849..21148033	Protein kinase domain containing protein, expressed
LOC_Os07g35340	Os.31858.2.S1_x_at	10/11	7	+	21144849..21148033	Protein kinase domain containing protein, expressed
LOC_Os07g35340	Os.31858.1.S1_at	10/11	7	+	21144849..21148033	Protein kinase domain containing protein, expressed
LOC_Os07g35340	OsAffx.5535.1.S1_x_at	1/11	7	+	21144849..21148033	Protein kinase domain containing protein, expressed
LOC_Os07g35350	Os.25578.1.S1_at	11/11	7	+	21148322..21150633	Glycosyl hydrolases family 17 protein, expressed
LOC_Os07g35350	Os.57525.1.S1_x_at	10/11	7	+	21148322..21150633	Glycosyl hydrolases family 17 protein, expressed
LOC_Os07g35360	OsAffx.16565.1.S1_at	11/11	7	+	21152391..21152960	hypothetical protein
LOC_Os07g35370	Os.15426.1.S1_at	11/11	7	+	21153702..21157102	Protein kinase domain containing protein, expressed
LOC_Os07g35380	Os.31858.2.S1_at	1/11	7	+	21159451..21162153	Protein kinase domain containing protein, expressed
LOC_Os07g35390	Os.19584.1.A1_at	11/11	7	+	21165567..21168984	Protein kinase domain containing protein, expressed
LOC_Os07g35390	Os.48695.1.S1_x_at	1/11	7	+	21165567..21168984	Protein kinase domain containing protein, expressed
LOC_Os07g35400	NA	NA	7	+	21170504..21170956	hypothetical protein
LOC_Os07g35410	Os.26816.1.A1_s_at	11/11	7	+	21173358..21176868	Protein kinase domain containing protein, expressed
LOC_Os07g35410	Os.26816.2.S1_s_at	11/11	7	+	21173358..21176868	Protein kinase domain containing protein, expressed
LOC_Os07g35410	OsAffx.5535.1.S1_x_at	1/11	7	+	21173358..21176868	Protein kinase domain containing protein, expressed
LOC_Os07g35410	Os.31858.2.S1_x_at	1/11	7	+	21173358..21176868	Protein kinase domain containing protein, expressed
LOC_Os07g35420	Os.43567.1.S1_x_at	3/11	7	+	21180252..21180786	transposon protein, putative, unclassified
LOC_Os07g35420	Os.38172.1.S1_x_at	3/11	7	+	21180252..21180786	transposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
GO:0016301	molecular_function	kinase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.15426.1.S1_at--131--467	1	Chr07:21154389..21154413 (25 bp)	GCGTGGCAACTACTCCGTCAAGTCA	LOC_Os07g35370
Os.15426.1.S1_at--693--535	1	Chr07:21154166..21154304 (25 bp)	GAAGATCTCCTGAACACGATATGGG	LOC_Os07g35370
Os.15426.1.S1_at--963--629	1	Chr07:21154118..21154142 (25 bp)	GATGAGATGGTAGACCCGGCCATGA	LOC_Os07g35370
Os.15426.1.S1_at--246--443	1	Chr07:21154100..21154124 (25 bp)	GCCATGAGCAGGTACGTCTCGGCGA	LOC_Os07g35370
Os.15426.1.S1_at--955--885	1	Chr07:21153991..21154015 (25 bp)	TGATGCTCGACAGCGAGACGGTCTC	LOC_Os07g35370
Os.15426.1.S1_at--1140--581	1	Chr07:21153891..21153915 (25 bp)	GACCGCGTCAGTGTAGAACCTGTCA	LOC_Os07g35370
Os.15426.1.S1_at--330--135	1	Chr07:21153863..21153887 (25 bp)	AGAGAGCTTCGATCGGTCCAGGATA	LOC_Os07g35370
Os.15426.1.S1_at--71--101	1	Chr07:21153844..21153868 (25 bp)	AGGATATGGAACTTCTTGCGCTGCT	LOC_Os07g35370
Os.15426.1.S1_at--1123--1069	1	Chr07:21153829..21153853 (25 bp)	TTGCGCTGCTGATTAGTGGCTCCCA	LOC_Os07g35370
Os.15426.1.S1_at--901--801	1	Chr07:21153796..21153820 (25 bp)	GGAGGATTGTGCTACTGTACGGACA	LOC_Os07g35370
Os.15426.1.S1_at--1135--17	1	Chr07:21153744..21153768 (25 bp)	ATTTTTGTACAAGCCCACGTGCATT	LOC_Os07g35370

Target Sequence

GCGTGGCAACTACTCCGTCAAGTCAGACGCGTTCAGCTTCGGCGTCATGGTGCTGGAGATCGTGACGGGAAGGAAGAACA
ACGACTTCTACAACAACTCTCACCAATCTGAAGATCTCCTGAACACGATATGGGAGCGTTGGATGGCCGGAACCGTGGAT
GAGATGGTAGACCCGGCCATGAGCAGGTACGTCTCGGCGAGCGACGTGCGGAAGTGCGTCCACGTAGCGCTCCTGTGCGT
GCAGGAAAACCCCGCGGATCGGCCGGTGATGTCGTCGGTGGTGATGATGCTCGACAGCGAGACGGTCTCCCTCCAGGTGC
CCTCCAAGCCGGCGTTCTTCGCCAGGAACGGCGGCGCTAAACCCGGCGTCGCGTCCGACGAGTCGACCGCGTCAGTGTAG
AACCTGTCATAGAGAGAGCTTCGATCGGTCCAGGATATGGAACTTCTTGCGCTGCTGATTAGTGGCTCCCACNTCTGAAA
GGAGGATTGTGCTACTGTACGGACAATGTAAGAATCATGAAAAGTTTGCACAATTTTTGTACAAGCCCACGTGCATT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis