Browse Element(s) Details


OsAffx.5535.1.S1_x_at

Description tigr:9635.m03511
TID=OsAffx.5535.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3554011/11Protein kinase domain containing protein, expressed
LOC_Os07g354101/11Protein kinase domain containing protein, expressed
LOC_Os07g353401/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g35510Os.14978.1.S1_a_at11/117+21236583..21239569Glycosyl hydrolases family 17 protein, expressed
LOC_Os07g35520Os.7086.1.S1_s_at11/117+21243181..21246138Glycosyl hydrolases family 17 protein, expressed
LOC_Os07g35520OsAffx.16567.1.S1_at11/117+21243181..21246138Glycosyl hydrolases family 17 protein, expressed
LOC_Os07g35520Os.7086.1.S1_at11/117+21243181..21246138Glycosyl hydrolases family 17 protein, expressed
LOC_Os07g35530Os.33878.1.S1_at6/117+21260093..21262569hypothetical protein
LOC_Os07g35530Os.27102.1.S1_x_at1/117+21260093..21262569hypothetical protein
LOC_Os07g35540OsAffx.5535.1.S1_x_at11/117+21264348..21267617Protein kinase domain containing protein, expressed
LOC_Os07g35540OsAffx.5535.1.S1_at11/117+21264348..21267617Protein kinase domain containing protein, expressed
LOC_Os07g35540Os.31858.2.S1_x_at1/117+21264348..21267617Protein kinase domain containing protein, expressed
LOC_Os07g35540Os.26816.1.A1_s_at1/117+21264348..21267617Protein kinase domain containing protein, expressed
LOC_Os07g35550NANA7+21269020..21269436transposon protein, putative, unclassified
LOC_Os07g35560Os.27755.1.S1_at11/117+21278612..21280941Glycosyl hydrolases family 17 protein, expressed
LOC_Os07g35570OsAffx.28764.1.S1_at11/117+21291434..21292444MBOAT family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5535.1.S1_x_at--393--7653Chr07:21266061..21266085 (25 bp)
GGGAGTACTCTCAGATGGACAAGAA
LOC_Os07g35540
OsAffx.5535.1.S1_x_at--62--9671Chr07:21266130..21266154 (25 bp)
TCAGCTACACAATGAGGTTCTGTTA
LOC_Os07g35540
OsAffx.5535.1.S1_x_at--417--9791Chr07:21266172..21266196 (25 bp)
TAAGAACCTTGTTCGGCTACATGGA
LOC_Os07g35540
OsAffx.5535.1.S1_x_at--722--8311Chr07:21266186..21266210 (25 bp)
GGCTACATGGATTTTGCTTGCATCA
LOC_Os07g35540
OsAffx.5535.1.S1_x_at--704--9191Chr07:21266240..21266264 (25 bp)
TCAAGAACGGGAGCCTGGACAACTT
LOC_Os07g35540
OsAffx.5535.1.S1_x_at--414--4471Chr07:21266252..21266276 (25 bp)
GCCTGGACAACTTCCTATTCGGTAA
LOC_Os07g35540
OsAffx.5535.1.S1_x_at--817--7051Chr07:21266273..21266297 (25 bp)
GTAATTTTACTTCCCATTCAAACAT
LOC_Os07g35540
OsAffx.5535.1.S1_x_at--829--10331Chr07:21266308..21266332 (25 bp)
TTTACACTTCTTGAGGAGATACCAA
LOC_Os07g35540
OsAffx.5535.1.S1_x_at--897--411Chr07:21266753..21266777 (25 bp)
ATCATTCACCGGGACCTAAAATCGA
LOC_Os07g35540
OsAffx.5535.1.S1_x_at--94--5511Chr07:21266776..21266800 (25 bp)
GAACAACATTTTACTTGGTGAGGAT
LOC_Os07g35540
OsAffx.5535.1.S1_x_at--565--4771Chr07:21266836..21266860 (25 bp)
GCTGCTAGGAGAAGGCCATACTCAT
LOC_Os07g35540
Target Sequence 
GGGAGTACTCTCAGATGGACAAGAAGTAGCAGTCAAGAAACTTTTAGGAACAAGTGGGCATGGATTAGATCAGCTACACA
ATGAGGTTCTGTTATTGGCAGAGCTTCAGCATAAGAACCTTGTTCGGCTACATGGATTTTGCTTGCATCAGGGGGAGACA
TTACTGGTTTATGAATACATCAAGAACGGGAGCCTGGACAACTTCCTATTCGGTAATTTTACTTCCCATTCAAACATATC
TTATTTTTTTACACTTCTTGAGGAGATACCAAAAGATATCAATAGGGGAAATGCATTAAACTGGGAGCAACAATACAACA
TCATTCTTGGAATTGCCAAGGGAATATTGTATCTACACGAGGACTCGAGCTTGAGGATCATTCACCGGGACCTAAAATCG
AACAACATTTTACTTGGTGAGGATATGGAACCGAAAATTGCAGATTTTGGATTGGCAAGGCTGCTAGGAGAAGGCCATAC
TCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5535.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis