Browse Element(s) Details


Os.27755.1.S1_at

Description gb:AK071889.1
DB_XREF= gi:32981912
TID=Os.27755.1
CNT=36
FEA=FLmRNA
TIER=FL+Stack
STK=23
UG=Os.27755 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013047P11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013047P08, full insert sequence.
FL= gb:AK071889.1 gb:AK098943.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3556011/11Glycosyl hydrolases family 17 protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g35530Os.33878.1.S1_at6/117+21260093..21262569hypothetical protein
LOC_Os07g35530Os.27102.1.S1_x_at1/117+21260093..21262569hypothetical protein
LOC_Os07g35540OsAffx.5535.1.S1_x_at11/117+21264348..21267617Protein kinase domain containing protein, expressed
LOC_Os07g35540OsAffx.5535.1.S1_at11/117+21264348..21267617Protein kinase domain containing protein, expressed
LOC_Os07g35540Os.31858.2.S1_x_at1/117+21264348..21267617Protein kinase domain containing protein, expressed
LOC_Os07g35540Os.26816.1.A1_s_at1/117+21264348..21267617Protein kinase domain containing protein, expressed
LOC_Os07g35550NANA7+21269020..21269436transposon protein, putative, unclassified
LOC_Os07g35560Os.27755.1.S1_at11/117+21278612..21280941Glycosyl hydrolases family 17 protein, expressed
LOC_Os07g35570OsAffx.28764.1.S1_at11/117+21291434..21292444MBOAT family protein, expressed
LOC_Os07g35580Os.19978.1.S1_at11/117+21293506..21297882Protein kinase domain containing protein, expressed
LOC_Os07g35600Os.54578.1.S1_at11/117+21297939..21309645expressed protein
LOC_Os07g35600OsAffx.28765.1.S1_at1/117+21297939..21309645expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0031225cellular_componentanchored to membrane
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27755.1.S1_at--31--5131Chr07:21279435..21279459 (25 bp)
GCACACGCATCTTACGCGTTTAATG
LOC_Os07g35560
Os.27755.1.S1_at--173--9991Chr07:21279385..21279409 (25 bp)
TAGCGGTACATGTGACTTCTCTGGT
LOC_Os07g35560
Os.27755.1.S1_at--454--9471Chr07:21279366..21279390 (25 bp)
TCTGGTGCTGCTTTTATTGTCTACA
LOC_Os07g35560
Os.27755.1.S1_at--522--10811Chr07:21279352..21279374 (23 bp)
TTGTCTACAAGCCTTCACCAAGTAT
LOC_Os07g35560
Os.27755.1.S1_at--933--2591Chr07:21279217..21279241 (25 bp)
AACCCAAGCTGGTGCATTGCGAAAC
LOC_Os07g35560
Os.27755.1.S1_at--376--7631Chr07:21279183..21279207 (25 bp)
GGGACACACGTTTGCAGAATGCGCT
LOC_Os07g35560
Os.27755.1.S1_at--857--1631Chr07:21279117..21279141 (25 bp)
AGCGTGGTGCGCAATGCTTTGACCC
LOC_Os07g35560
Os.27755.1.S1_at--275--131Chr07:21279051..21279075 (25 bp)
ATTATCAGACTACCGGTCGTGCCAG
LOC_Os07g35560
Os.27755.1.S1_at--465--9411Chr07:21279035..21279059 (25 bp)
TCGTGCCAGTGGGTCATGTGATTTT
LOC_Os07g35560
Os.27755.1.S1_at--705--771Chr07:21279020..21279044 (25 bp)
ATGTGATTTTAACGGCGCTGCTACC
LOC_Os07g35560
Os.27755.1.S1_at--475--7011Chr07:21278817..21278841 (25 bp)
GTACTCTCACCAAACAACTCTTGAA
LOC_Os07g35560
Target Sequence 
GCACACGCATCTTACGCGTTTAATGACTACTACCAACGTAAGAGCCAAGCTAGCGGTACATGTGACTTCTCTGGTGCTGC
TTTTATTGTCTACAAGCCTTCACCAAGTATCTGCGACCCGAACCCAAGCTGGTGCATTGCGAAACCGGAGGTTGGGGACA
CACGTTTGCAGAATGCGCTAGACTATGCATGCGGTAGCTGCGCAGATTGCAGCGCTATCCAGCGTGGTGCGCAATGCTTT
GACCCTGACACCAAGGTAGCGCATGCAACCTATGCATTCAACGACTATTATCAGACTACCGGTCGTGCCAGTGGGTCATG
TGATTTTAACGGCGCTGCTACCATTGTCACACAACAACCAAAGATTGGAAACTGCGTACTCTCACCAAACAACTCTTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27755.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis