Browse Element(s) Details


Os.26323.1.S1_at

Description gb:AU173497
DB_XREF= gi:12623284
DB_XREF=AU173497
CLONE=R3365
TID=Os.26323.1
CNT=8
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.26323 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OJ1058_A12.25 (OJ1058_A12.25), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3529011/11Protein kinase domain containing protein, expressed
LOC_Os07g353001/11serine/threonine kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g35250OsAffx.8939.1.S1_x_at4/117+21097764..21100200hypothetical protein
LOC_Os07g35250OsAffx.8939.1.S1_at4/117+21097764..21100200hypothetical protein
LOC_Os07g35250OsAffx.16289.1.S1_x_at1/117+21097764..21100200hypothetical protein
LOC_Os07g35250OsAffx.1436.1.S1_x_at1/117+21097764..21100200hypothetical protein
LOC_Os07g35260Os.27098.4.S1_x_at11/117+21102826..21107979Protein kinase domain containing protein, expressed
LOC_Os07g35270NANA7+21110048..21111103transposon protein, putative, unclassified
LOC_Os07g35280Os.10444.1.S1_at11/117+21114625..21119305Protein kinase domain containing protein, expressed
LOC_Os07g35290Os.26323.1.S1_at11/117+21119632..21123563Protein kinase domain containing protein, expressed
LOC_Os07g35290Os.40420.1.S1_x_at4/117+21119632..21123563Protein kinase domain containing protein, expressed
LOC_Os07g35300Os.40420.1.S1_x_at11/117+21126918..21130816serine/threonine kinase, putative, expressed
LOC_Os07g35300Os.26323.1.S1_at1/117+21126918..21130816serine/threonine kinase, putative, expressed
LOC_Os07g35310Os.49818.1.S1_s_at5/117+21131765..21133318Serine/threonine-protein kinase receptor precursor, putative
LOC_Os07g35320NANA7+21137419..21138921serine/threonine kinase, putative
LOC_Os07g35330Os.26914.1.S1_at11/117+21139268..21142585receptor-like protein kinase homolog RK20-1, putative, expressed
LOC_Os07g35340Os.31858.3.S1_x_at11/117+21144849..21148033Protein kinase domain containing protein, expressed
LOC_Os07g35340Os.31858.2.S1_at11/117+21144849..21148033Protein kinase domain containing protein, expressed
LOC_Os07g35340Os.31858.2.S1_x_at10/117+21144849..21148033Protein kinase domain containing protein, expressed
LOC_Os07g35340Os.31858.1.S1_at10/117+21144849..21148033Protein kinase domain containing protein, expressed
LOC_Os07g35340OsAffx.5535.1.S1_x_at1/117+21144849..21148033Protein kinase domain containing protein, expressed
LOC_Os07g35350Os.25578.1.S1_at11/117+21148322..21150633Glycosyl hydrolases family 17 protein, expressed
LOC_Os07g35350Os.57525.1.S1_x_at10/117+21148322..21150633Glycosyl hydrolases family 17 protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26323.1.S1_at--1136--1511Chr07:21123090..21123114 (25 bp)
AGCAGCAGCACAGTGTCTCTTCAAT
LOC_Os07g35290
Os.26323.1.S1_at--660--1491Chr07:21123096..21123120 (25 bp)
AGCACAGTGTCTCTTCAATCTCCAT
LOC_Os07g35290
Os.26323.1.S1_at--560--9212Chr07:21130673..21130697 (25 bp)
TCCAAGCCATCATTTTTCATTCCCA
LOC_Os07g35300
Os.26323.1.S1_at--597--3011Chr07:21123196..21123220 (25 bp)
AATCGACTGCCTCGACCGGTAGGTC
LOC_Os07g35290
Os.26323.1.S1_at--44--9931Chr07:21123215..21123239 (25 bp)
TAGGTCGGGAGGGATGTCAGTTAAT
LOC_Os07g35290
Os.26323.1.S1_at--178--3631Chr07:21123349..21123373 (25 bp)
CTTCAGGGAGAAGGCCATAAACTTG
LOC_Os07g35290
Os.26323.1.S1_at--640--8411Chr07:21123361..21123385 (25 bp)
GGCCATAAACTTGTAGGAGAAGCAT
LOC_Os07g35290
Os.26323.1.S1_at--1113--51Chr07:21123384..21123408 (25 bp)
ATTGAATTCTGAGTGCATTTCTCCA
LOC_Os07g35290
Os.26323.1.S1_at--287--1131Chr07:21123395..21123419 (25 bp)
AGTGCATTTCTCCATTGGCTGAGTC
LOC_Os07g35290
Os.26323.1.S1_at--603--4951Chr07:21123398..21123422 (25 bp)
GCATTTCTCCATTGGCTGAGTCAAT
LOC_Os07g35290
Os.26323.1.S1_at--976--3791Chr07:21123404..21123428 (25 bp)
CTCCATTGGCTGAGTCAATATTTTG
LOC_Os07g35290
Target Sequence 
AGCAGCAGCACAGTGTCTCTTCAATCTCCATCCAAGCCATCATTTTTCATTCCCAANAGTGACACAGACTCAAATATATA
CTCGGAATCACACCCACTAACTTCCCAATCGACTGCCTCGACCGGTAGGTCGGGAGGGATGTCAGTTAATGATGTGTCAA
TTACAGAGCTTGAACCAAGATAAGGAAACCAANTCCTTNGAATTTAAGATAAGAAAATCANTGACAACGGTAATNGANTT
GTTACNTTTNAGAAACAAACTTCAGGGAGAAGGCCATAAACTTGTAGGAGAAGCATTGAATTCTGAGTGCATTTCTCCAT
TGGCTGAGTCAATATTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26323.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis