Browse Element(s) Details


Os.10444.1.S1_at

Description gb:CA763700
DB_XREF= gi:25807739
DB_XREF=BR060006B20D06.ab1
CLONE=BR060006B20D06.ab1
TID=Os.10444.1
CNT=4
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.10444 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OJ1058_A12.24 (OJ1058_A12.24), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3528011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g35240Os.10827.1.S1_x_at11/117+21085601..21092285transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g35240Os.46055.2.S1_x_at5/117+21085601..21092285transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g35250OsAffx.8939.1.S1_x_at4/117+21097764..21100200hypothetical protein
LOC_Os07g35250OsAffx.8939.1.S1_at4/117+21097764..21100200hypothetical protein
LOC_Os07g35250OsAffx.16289.1.S1_x_at1/117+21097764..21100200hypothetical protein
LOC_Os07g35250OsAffx.1436.1.S1_x_at1/117+21097764..21100200hypothetical protein
LOC_Os07g35260Os.27098.4.S1_x_at11/117+21102826..21107979Protein kinase domain containing protein, expressed
LOC_Os07g35270NANA7+21110048..21111103transposon protein, putative, unclassified
LOC_Os07g35280Os.10444.1.S1_at11/117+21114625..21119305Protein kinase domain containing protein, expressed
LOC_Os07g35290Os.26323.1.S1_at11/117+21119632..21123563Protein kinase domain containing protein, expressed
LOC_Os07g35290Os.40420.1.S1_x_at4/117+21119632..21123563Protein kinase domain containing protein, expressed
LOC_Os07g35300Os.40420.1.S1_x_at11/117+21126918..21130816serine/threonine kinase, putative, expressed
LOC_Os07g35300Os.26323.1.S1_at1/117+21126918..21130816serine/threonine kinase, putative, expressed
LOC_Os07g35310Os.49818.1.S1_s_at5/117+21131765..21133318Serine/threonine-protein kinase receptor precursor, putative
LOC_Os07g35320NANA7+21137419..21138921serine/threonine kinase, putative
LOC_Os07g35330Os.26914.1.S1_at11/117+21139268..21142585receptor-like protein kinase homolog RK20-1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10444.1.S1_at--859--9671Chr07:21118645..21118669 (25 bp)
TCACCTAAGATCGATATTTTCAGCT
LOC_Os07g35280
Os.10444.1.S1_at--902--9851Chr07:21118729..21118753 (25 bp)
TACAACGCAGTGAATCTCCTGACAG
LOC_Os07g35280
Os.10444.1.S1_at--675--5251Chr07:21118740..21118883 (25 bp)
GAATCTCCTGACAGAAGTGTGGAAT
LOC_Os07g35280
Os.10444.1.S1_at--115--5751Chr07:21118898..21118922 (25 bp)
GACGGCACTGCAGCTGGCTGATCAA
LOC_Os07g35280
Os.10444.1.S1_at--419--831Chr07:21118930..21118954 (25 bp)
ATGGATATTCCGACAGCAAAGTGCT
LOC_Os07g35280
Os.10444.1.S1_at--366--5651Chr07:21118941..21118965 (25 bp)
GACAGCAAAGTGCTACGATGCATCC
LOC_Os07g35280
Os.10444.1.S1_at--52--2651Chr07:21119036..21119060 (25 bp)
AACCAGACGCAGAATAAAACTCCAG
LOC_Os07g35280
Os.10444.1.S1_at--301--6751Chr07:21119101..21119125 (25 bp)
GTTCAGTTTATCAACAACAACACAG
LOC_Os07g35280
Os.10444.1.S1_at--1105--2451Chr07:21119116..21119140 (25 bp)
AACAACACAGACATCGCAACTACAT
LOC_Os07g35280
Os.10444.1.S1_at--1116--7931Chr07:21119168..21119192 (25 bp)
GGATAAATTCTCTGTAAATGATGTC
LOC_Os07g35280
Os.10444.1.S1_at--687--3091Chr07:21119196..21119220 (25 bp)
AATACTGATCCCTATCCTAGATGAT
LOC_Os07g35280
Target Sequence 
TCACCTAAGATCGATATTTTCAGCTTTGGTGTTTTGGTTCNTGAAATTGTAACCGGGAGAAGGAATAGCNGTTTCGNCAN
CACATACAACGCAGTGAATCTCCTGACAGAAGTGTGGAATTGCTGGACAAAGGGGACGGCACTGCAGCTGGCTGATCAAT
CNCTTGATGGATATTCCGACAGCAAAGTGCTACGATGCATCCNCATTGGTCTNCTTNGTGTCCAAGAGAGCCCNNTTGAC
AGGCCAAGCATATNTTCAGTGATTNTAATGTTAACCAGACGCAGAATAAAACTCCAGCAACCGCGNCAACCGGCATTNTT
CTTTGGAGGGGACTTCAGTTCAGTTTATCAACAACAACACAGACATCGCAACTACATGTATGATAAGNNTGGNGTGATTG
TTGAGGATAAATTCTCTGTAAATGATGTCNCCAATACTGATCCCTATCCTAGATGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10444.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis