Browse Element(s) Details


Os.49818.1.S1_s_at

Description gb:AK111734.1
DB_XREF= gi:37988397
TID=Os.49818.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49818 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023041L05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023041L05, full insert sequence.
FL= gb:AK111734.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g353105/11Serine/threonine-protein kinase receptor precursor, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g35260Os.27098.4.S1_x_at11/117+21102826..21107979Protein kinase domain containing protein, expressed
LOC_Os07g35270NANA7+21110048..21111103transposon protein, putative, unclassified
LOC_Os07g35280Os.10444.1.S1_at11/117+21114625..21119305Protein kinase domain containing protein, expressed
LOC_Os07g35290Os.26323.1.S1_at11/117+21119632..21123563Protein kinase domain containing protein, expressed
LOC_Os07g35290Os.40420.1.S1_x_at4/117+21119632..21123563Protein kinase domain containing protein, expressed
LOC_Os07g35300Os.40420.1.S1_x_at11/117+21126918..21130816serine/threonine kinase, putative, expressed
LOC_Os07g35300Os.26323.1.S1_at1/117+21126918..21130816serine/threonine kinase, putative, expressed
LOC_Os07g35310Os.49818.1.S1_s_at5/117+21131765..21133318Serine/threonine-protein kinase receptor precursor, putative
LOC_Os07g35320NANA7+21137419..21138921serine/threonine kinase, putative
LOC_Os07g35330Os.26914.1.S1_at11/117+21139268..21142585receptor-like protein kinase homolog RK20-1, putative, expressed
LOC_Os07g35340Os.31858.3.S1_x_at11/117+21144849..21148033Protein kinase domain containing protein, expressed
LOC_Os07g35340Os.31858.2.S1_at11/117+21144849..21148033Protein kinase domain containing protein, expressed
LOC_Os07g35340Os.31858.2.S1_x_at10/117+21144849..21148033Protein kinase domain containing protein, expressed
LOC_Os07g35340Os.31858.1.S1_at10/117+21144849..21148033Protein kinase domain containing protein, expressed
LOC_Os07g35340OsAffx.5535.1.S1_x_at1/117+21144849..21148033Protein kinase domain containing protein, expressed
LOC_Os07g35350Os.25578.1.S1_at11/117+21148322..21150633Glycosyl hydrolases family 17 protein, expressed
LOC_Os07g35350Os.57525.1.S1_x_at10/117+21148322..21150633Glycosyl hydrolases family 17 protein, expressed
LOC_Os07g35360OsAffx.16565.1.S1_at11/117+21152391..21152960hypothetical protein
LOC_Os07g35370Os.15426.1.S1_at11/117+21153702..21157102Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009816biological_processdefense response to pathogenic bacteria, incompatible interaction
GO:0016020cellular_componentmembrane
GO:0004672molecular_functionprotein kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49818.1.S1_s_at--330--7111Chr07:21132281..21132305 (25 bp)
GTCACCGGAATATGCGATGCGAGGC
LOC_Os07g35310
Os.49818.1.S1_s_at--327--2531Chr07:21132256..21132280 (25 bp)
AACTACTCCCTCAAGTCCGACGTGT
LOC_Os07g35310
Os.49818.1.S1_s_at--153--4851Chr07:21132177..21132201 (25 bp)
GCTACAACTCCCTGCAATCCGAAGA
LOC_Os07g35310
Os.49818.1.S1_s_at--1112--5351Chr07:21132161..21132181 (21 bp)
GAAGACCTCTTAACCCTTGTGTGGG
LOC_Os07g35310
Os.49818.1.S1_s_at--188--9551Chr07:21132057..21132174 (25 bp)
TCTTAACCCTTGTGTGGGAGCAGTG
LOC_Os07g35310
Os.49818.1.S1_s_at--1092--3251Chr07:21131727..21131751 (25 bp)
CAACGGTGAAACTGTGCTCGCTGTG
NONE
Os.49818.1.S1_s_at--237--2391Chr07:21131719..21131743 (25 bp)
AAACTGTGCTCGCTGTGTGGGATCT
NONE
Os.49818.1.S1_s_at--563--8671Chr07:21131704..21131728 (25 bp)
TGTGGGATCTGCCATTCCGCTGAAG
NONE
Os.49818.1.S1_s_at--704--91Chr07:21131691..21131715 (25 bp)
ATTCCGCTGAAGCATTCTTTGCCAG
NONE
Os.49818.1.S1_s_at--800--1531Chr07:21131681..21131705 (25 bp)
AGCATTCTTTGCCAGGTTAGGTTAG
NONE
Os.49818.1.S1_s_at--827--10171Chr07:21131643..21131667 (25 bp)
TATAACGCAATGTACCAGACTGATT
NONE
Target Sequence 
GTCACCGGAATATGCGATGCGAGGCAACTACTCCCTCAAGTCCGACGTGTTCAGCTTCGGCGTCATGGTGCTGGAGATCG
TGACGGGGAAGAAGAACAACGACTGCTACAACTCCCTGCAATCCGAAGACCTCTTAACCCTTGTGTGGGAGCAGTGGACG
GCGAGGGCGGTGTCGGAGGCGGTCGACCCGGTGATGGGCGGCGGTTTCTCGTGGAGCGACGTGATGCGGTGCATCCACAT
CGGTCTGCTCTGCGTGCAGGAGAACCCTGCGGATCGGCCGGTGATGTCGTCGGTGGTGATGATGCTCGGCAGCGACACGG
TGTCGCTCAGGGCGCCGTCCAAGCCGGCGTTCTGTGCCAGCTCGGGGGGCACGTCGTCTGGTACGTCGACGGCGGCGTCG
GTGCAAGGCAAGTAACTGTAGAAGTGTGCAACGGTGAAACTGTGCTCGCTGTGTGGGATCTGCCATTCCGCTGAAGCATT
CTTTGCCAGGTTAGGTTAGGCTTTCATAAGTATATAACGCAATGTACCAGACTGATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49818.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis