Browse Element(s) Details


Os.40420.1.S1_x_at

Description gb:NM_185885.1
DB_XREF= gi:34898855
GEN=OJ1058_A12.26
TID=Os.40420.1
CNT=4
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.40420 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OJ1058_A12.26 (OJ1058_A12.26), mRNA
DEF=Oryza sativa (japonica cultivar-group) OJ1058_A12.26 (OJ1058_A12.26), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3530011/11serine/threonine kinase, putative, expressed
LOC_Os07g352904/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g35260Os.27098.4.S1_x_at11/117+21102826..21107979Protein kinase domain containing protein, expressed
LOC_Os07g35270NANA7+21110048..21111103transposon protein, putative, unclassified
LOC_Os07g35280Os.10444.1.S1_at11/117+21114625..21119305Protein kinase domain containing protein, expressed
LOC_Os07g35290Os.26323.1.S1_at11/117+21119632..21123563Protein kinase domain containing protein, expressed
LOC_Os07g35290Os.40420.1.S1_x_at4/117+21119632..21123563Protein kinase domain containing protein, expressed
LOC_Os07g35300Os.40420.1.S1_x_at11/117+21126918..21130816serine/threonine kinase, putative, expressed
LOC_Os07g35300Os.26323.1.S1_at1/117+21126918..21130816serine/threonine kinase, putative, expressed
LOC_Os07g35310Os.49818.1.S1_s_at5/117+21131765..21133318Serine/threonine-protein kinase receptor precursor, putative
LOC_Os07g35320NANA7+21137419..21138921serine/threonine kinase, putative
LOC_Os07g35330Os.26914.1.S1_at11/117+21139268..21142585receptor-like protein kinase homolog RK20-1, putative, expressed
LOC_Os07g35340Os.31858.3.S1_x_at11/117+21144849..21148033Protein kinase domain containing protein, expressed
LOC_Os07g35340Os.31858.2.S1_at11/117+21144849..21148033Protein kinase domain containing protein, expressed
LOC_Os07g35340Os.31858.2.S1_x_at10/117+21144849..21148033Protein kinase domain containing protein, expressed
LOC_Os07g35340Os.31858.1.S1_at10/117+21144849..21148033Protein kinase domain containing protein, expressed
LOC_Os07g35340OsAffx.5535.1.S1_x_at1/117+21144849..21148033Protein kinase domain containing protein, expressed
LOC_Os07g35350Os.25578.1.S1_at11/117+21148322..21150633Glycosyl hydrolases family 17 protein, expressed
LOC_Os07g35350Os.57525.1.S1_x_at10/117+21148322..21150633Glycosyl hydrolases family 17 protein, expressed
LOC_Os07g35360OsAffx.16565.1.S1_at11/117+21152391..21152960hypothetical protein
LOC_Os07g35370Os.15426.1.S1_at11/117+21153702..21157102Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.40420.1.S1_x_at--173--4051Chr07:21130254..21130278 (25 bp)
CGATGCGTGGCCACTATTCTGTAAA
LOC_Os07g35300
Os.40420.1.S1_x_at--171--3431Chr07:21130281..21130305 (25 bp)
CAGACGTCTTTAGCTTTGGCATATT
LOC_Os07g35300
Os.40420.1.S1_x_at--1005--1411Chr07:21130331..21130355 (25 bp)
AGAAGCAGTGGTTCATATAGCTTTG
LOC_Os07g35300
Os.40420.1.S1_x_at--617--9731Chr07:21130357..21130381 (25 bp)
TCAATCATATGATCTCCTAAGCCGT
LOC_Os07g35300
Os.40420.1.S1_x_at--445--1492Chr07:21130485..21130509 (25 bp)
AGCACTGGACCATGGGAACAATTTT
LOC_Os07g35300
Os.40420.1.S1_x_at--1044--2652Chr07:21130534..21130558 (25 bp)
AAGCCATGCTCCTCGAGACCAGATG
LOC_Os07g35300
Os.40420.1.S1_x_at--1037--1372Chr07:21130549..21130573 (25 bp)
AGACCAGATGCTCAAGTGTATTCAC
LOC_Os07g35300
Os.40420.1.S1_x_at--429--2872Chr07:21130562..21130586 (25 bp)
AAGTGTATTCACATTGGGCTACTGT
LOC_Os07g35300
Os.40420.1.S1_x_at--174--2131Chr07:21130625..21130649 (25 bp)
ACAGTGAATATCATGCTTAGCAGCA
LOC_Os07g35300
Os.40420.1.S1_x_at--177--3111Chr07:21130715..21130739 (25 bp)
AATATATACTCGGAATCATACCCAC
LOC_Os07g35300
Os.40420.1.S1_x_at--383--2611Chr07:21130749..21130773 (25 bp)
AACCGACCCATAGGTCTGGGATGAT
LOC_Os07g35300
Target Sequence 
CGATGCGTGGCCACTATTCTGTAAANTCAGACGTCTTTAGCTTTGGCATATTGATGATAGAAATTGNGACAGGNAAGAAG
AAGCAGTGGTTCATATAGCTTTGATCAATCATATGATCTCCTAAGCCGTNNATGGGAGCACTGGACCATGGGAACAATTT
TGGAGATGATGGATCCCTCTCTTACAAGCCATGCTCCTCGAGACCAGATGCTCAAGTGTATTCACATTGGGCTACTGTGT
GTTCAAGNATAACCCAGCAGATCGANCCTATGNTGTCAACAGTGAATATCATGCTTAGCAGCANCACANGTGTCTCTTNC
AATCCCCATCCAAGNCNNNNNNTTTNATTCCCAAGAGTGGTACAGACTCAAATATATACTCGGAATCATACCCACAAACT
TCCCAACCGACCCATAGGTCTGGGATGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.40420.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis