Browse Element(s) Details


OsAffx.16565.1.S1_at

Description tigr:9635.m03492
TID=OsAffx.16565.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3536011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g35300Os.40420.1.S1_x_at11/117+21126918..21130816serine/threonine kinase, putative, expressed
LOC_Os07g35300Os.26323.1.S1_at1/117+21126918..21130816serine/threonine kinase, putative, expressed
LOC_Os07g35310Os.49818.1.S1_s_at5/117+21131765..21133318Serine/threonine-protein kinase receptor precursor, putative
LOC_Os07g35320NANA7+21137419..21138921serine/threonine kinase, putative
LOC_Os07g35330Os.26914.1.S1_at11/117+21139268..21142585receptor-like protein kinase homolog RK20-1, putative, expressed
LOC_Os07g35340Os.31858.3.S1_x_at11/117+21144849..21148033Protein kinase domain containing protein, expressed
LOC_Os07g35340Os.31858.2.S1_at11/117+21144849..21148033Protein kinase domain containing protein, expressed
LOC_Os07g35340Os.31858.2.S1_x_at10/117+21144849..21148033Protein kinase domain containing protein, expressed
LOC_Os07g35340Os.31858.1.S1_at10/117+21144849..21148033Protein kinase domain containing protein, expressed
LOC_Os07g35340OsAffx.5535.1.S1_x_at1/117+21144849..21148033Protein kinase domain containing protein, expressed
LOC_Os07g35350Os.25578.1.S1_at11/117+21148322..21150633Glycosyl hydrolases family 17 protein, expressed
LOC_Os07g35350Os.57525.1.S1_x_at10/117+21148322..21150633Glycosyl hydrolases family 17 protein, expressed
LOC_Os07g35360OsAffx.16565.1.S1_at11/117+21152391..21152960hypothetical protein
LOC_Os07g35370Os.15426.1.S1_at11/117+21153702..21157102Protein kinase domain containing protein, expressed
LOC_Os07g35380Os.31858.2.S1_at1/117+21159451..21162153Protein kinase domain containing protein, expressed
LOC_Os07g35390Os.19584.1.A1_at11/117+21165567..21168984Protein kinase domain containing protein, expressed
LOC_Os07g35390Os.48695.1.S1_x_at1/117+21165567..21168984Protein kinase domain containing protein, expressed
LOC_Os07g35400NANA7+21170504..21170956hypothetical protein
LOC_Os07g35410Os.26816.1.A1_s_at11/117+21173358..21176868Protein kinase domain containing protein, expressed
LOC_Os07g35410Os.26816.2.S1_s_at11/117+21173358..21176868Protein kinase domain containing protein, expressed
LOC_Os07g35410OsAffx.5535.1.S1_x_at1/117+21173358..21176868Protein kinase domain containing protein, expressed
LOC_Os07g35410Os.31858.2.S1_x_at1/117+21173358..21176868Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16565.1.S1_at--549--9531Chr07:21152408..21152432 (25 bp)
TCTTCCCCAACGCTTGAGACTGGCG
LOC_Os07g35360
OsAffx.16565.1.S1_at--421--5991Chr07:21152423..21152447 (25 bp)
GAGACTGGCGCGGATCTTCTTCCAC
LOC_Os07g35360
OsAffx.16565.1.S1_at--164--9991Chr07:21152483..21152507 (25 bp)
TACCACCGACAGCATTCCTTGGAAC
LOC_Os07g35360
OsAffx.16565.1.S1_at--773--9711Chr07:21152592..21152616 (25 bp)
TCAACCCCTATTGGCTCCGGAGGAG
LOC_Os07g35360
OsAffx.16565.1.S1_at--327--3831Chr07:21152648..21152672 (25 bp)
CTGCGGAGCCCATCTCCACAGGGAG
LOC_Os07g35360
OsAffx.16565.1.S1_at--338--1091Chr07:21152671..21152695 (25 bp)
AGGGCCCTGATCGAACGCCTAGGAA
LOC_Os07g35360
OsAffx.16565.1.S1_at--723--4451Chr07:21152687..21152711 (25 bp)
GCCTAGGAAGCTGACCGAGCCTGAA
LOC_Os07g35360
OsAffx.16565.1.S1_at--594--6691Chr07:21152733..21152757 (25 bp)
GTTCGGAGCCAACCAAAGGGCCTCG
LOC_Os07g35360
OsAffx.16565.1.S1_at--983--9431Chr07:21152812..21152836 (25 bp)
TCGGAGGTCCAGGAGCCAGCTCAAG
LOC_Os07g35360
OsAffx.16565.1.S1_at--747--4331Chr07:21152820..21152844 (25 bp)
CCAGGAGCCAGCTCAAGTGTTCCGG
LOC_Os07g35360
OsAffx.16565.1.S1_at--1002--4391Chr07:21152905..21152929 (25 bp)
GCCATAAAAGCGCACTACTCATCTC
LOC_Os07g35360
Target Sequence 
TCTTCCCCAACGCTTGAGACTGGCGCGGATCTTCTTCCACCCTCTCTATCTCTTCCCTCAAATTCTCCCCACTGCTACCA
CCGACAGCATTCCTTGGAACCACCCGTGCTCCAACCCCAGCGCCGCTACAGCCAATGCCACTTCCCAGCGCCCCTATTGG
GGAAGGATTGCGACCTTGCACCATTCAACCCCTATTGGCTCCGGAGGAGGTAGGGCCTCTAGGGGCCTGCCGCCAACGCC
CTGCGGAGCCCATCTCCACAGGGAGGGCCCTGATCGAACGCCTAGGAAGCTGACCGAGCCTGAAGAGGGCAGTCGGCTCC
GAGAAGTTCGGAGCCAACCAAAGGGCCTCGGGGATCTCGGAGCCCAGTCAAGGCCCCCGGAGCCCCAGAGCCGGTTCAAG
GGCCTCGGAGGTCCAGGAGCCAGCTCAAGTGTTCCGGGGCTCTTGCCATGGCTCCGGGCCCGGAGCCTAGGGAGGACACC
GGGAATGAGTATGGGGTGCCATAAAAGCGCACTACTCATCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16565.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis