Browse Element(s) Details

Os.19584.1.A1_at

Description

gb:AK112096.1
DB_XREF= gi:37988759
TID=Os.19584.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.19584 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-107-H06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-107-H06, full insert sequence.
FL= gb:AK112096.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os07g35390	11/11	Protein kinase domain containing protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os07g35330	Os.26914.1.S1_at	11/11	7	+	21139268..21142585	receptor-like protein kinase homolog RK20-1, putative, expressed
LOC_Os07g35340	Os.31858.3.S1_x_at	11/11	7	+	21144849..21148033	Protein kinase domain containing protein, expressed
LOC_Os07g35340	Os.31858.2.S1_at	11/11	7	+	21144849..21148033	Protein kinase domain containing protein, expressed
LOC_Os07g35340	Os.31858.2.S1_x_at	10/11	7	+	21144849..21148033	Protein kinase domain containing protein, expressed
LOC_Os07g35340	Os.31858.1.S1_at	10/11	7	+	21144849..21148033	Protein kinase domain containing protein, expressed
LOC_Os07g35340	OsAffx.5535.1.S1_x_at	1/11	7	+	21144849..21148033	Protein kinase domain containing protein, expressed
LOC_Os07g35350	Os.25578.1.S1_at	11/11	7	+	21148322..21150633	Glycosyl hydrolases family 17 protein, expressed
LOC_Os07g35350	Os.57525.1.S1_x_at	10/11	7	+	21148322..21150633	Glycosyl hydrolases family 17 protein, expressed
LOC_Os07g35360	OsAffx.16565.1.S1_at	11/11	7	+	21152391..21152960	hypothetical protein
LOC_Os07g35370	Os.15426.1.S1_at	11/11	7	+	21153702..21157102	Protein kinase domain containing protein, expressed
LOC_Os07g35380	Os.31858.2.S1_at	1/11	7	+	21159451..21162153	Protein kinase domain containing protein, expressed
LOC_Os07g35390	Os.19584.1.A1_at	11/11	7	+	21165567..21168984	Protein kinase domain containing protein, expressed
LOC_Os07g35390	Os.48695.1.S1_x_at	1/11	7	+	21165567..21168984	Protein kinase domain containing protein, expressed
LOC_Os07g35400	NA	NA	7	+	21170504..21170956	hypothetical protein
LOC_Os07g35410	Os.26816.1.A1_s_at	11/11	7	+	21173358..21176868	Protein kinase domain containing protein, expressed
LOC_Os07g35410	Os.26816.2.S1_s_at	11/11	7	+	21173358..21176868	Protein kinase domain containing protein, expressed
LOC_Os07g35410	OsAffx.5535.1.S1_x_at	1/11	7	+	21173358..21176868	Protein kinase domain containing protein, expressed
LOC_Os07g35410	Os.31858.2.S1_x_at	1/11	7	+	21173358..21176868	Protein kinase domain containing protein, expressed
LOC_Os07g35420	Os.43567.1.S1_x_at	3/11	7	+	21180252..21180786	transposon protein, putative, unclassified
LOC_Os07g35420	Os.38172.1.S1_x_at	3/11	7	+	21180252..21180786	transposon protein, putative, unclassified
LOC_Os07g35430	OsAffx.22848.3.S1_x_at	3/11	7	+	21183325..21186369	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g35440	Os.24831.2.S1_at	5/11	7	+	21191497..21196338	retrotransposon protein, putative, unclassified
LOC_Os07g35440	Os.55127.1.S1_at	1/11	7	+	21191497..21196338	retrotransposon protein, putative, unclassified
LOC_Os07g35440	Os.53142.1.S1_at	1/11	7	+	21191497..21196338	retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
GO:0006468	biological_process	protein amino acid phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding
GO:0016301	molecular_function	kinase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.19584.1.A1_at--830--985	1	Chr07:21168281..21168305 (25 bp)	TACAACTCCCAACAATCTGAAGATC	LOC_Os07g35390
Os.19584.1.A1_at--985--375	1	Chr07:21168305..21168432 (25 bp)	CTCTTGACCATGATCTGGGAGCAAT	LOC_Os07g35390
Os.19584.1.A1_at--1047--859	1	Chr07:21168457..21168481 (25 bp)	TGGTCGATCCGAGCATGAACAGCTT	LOC_Os07g35390
Os.19584.1.A1_at--612--499	1	Chr07:21168469..21168493 (25 bp)	GCATGAACAGCTTCTTCTCGGAGAG	LOC_Os07g35390
Os.19584.1.A1_at--439--215	1	Chr07:21168475..21168499 (25 bp)	ACAGCTTCTTCTCGGAGAGCGACGT	LOC_Os07g35390
Os.19584.1.A1_at--704--785	1	Chr07:21168715..21168739 (25 bp)	GGTAGTCCAGTGTTGCTTATTATCA	LOC_Os07g35390
Os.19584.1.A1_at--590--365	1	Chr07:21168730..21168754 (25 bp)	CTTATTATCAGAGCGGTAGAGCCAG	LOC_Os07g35390
Os.19584.1.A1_at--549--1083	1	Chr07:21168794..21168818 (25 bp)	TTGTGCTACACTGTGCTACCGTACC	LOC_Os07g35390
Os.19584.1.A1_at--857--401	1	Chr07:21168813..21168837 (25 bp)	CGTACCCATGTGTAGCGGCAATTTA	LOC_Os07g35390
Os.19584.1.A1_at--239--43	1	Chr07:21168933..21168957 (25 bp)	ATCTTTTTCAACTGATGGCGAAATG	LOC_Os07g35390
Os.19584.1.A1_at--677--981	1	Chr07:21168959..21168983 (25 bp)	TAAACGAAATTGTGTCTTTTCGCTT	LOC_Os07g35390

Target Sequence

TACAACTCCCAACAATCTGAAGATCTCTTGACCATGATCTGGGAGCAATGGGTGGCCGGGACGGTGCTGGAGATGGTCGA
TCCGAGCATGAACAGCTTCTTCTCGGAGAGCGACGTGATGAGATGCATCCACATTGGGCTCCTCTGCGTGCAGGGTGACC
CGGCGAACCGGCCGGTGATGTCGTCGGTGGTGCTGATGCTCGGCACGGACACCGTCGAACTCCATGCCCCCGCGAAGCCG
ACGCTCTTCGCCAGGAAAGGCGGCGGCGACGAATCCGGCGTCGCGTCCGGCGGCATGTCAATCGTGTCATTGGAGGAGCA
GTCGTAGAGACGGTAGTCCAGTGTTGCTTATTATCAGAGCGGTAGAGCCAGAGGCCTGAAGAGGCCAGTGCAGAATCCTA
CGAGAGAAGATTGTGCTACACTGTGCTACCGTACCCATGTGTAGCGGCAATTTAGAAATGGCTGCCAGATCTTCATCGGA
GTGATCATGAAAAGATCNAGCGATAATGAAATTGTGTCAAATTACGATCAANATNANAGTAAACTTTAGATCTTTTTCAA
CTGATGGCGAAATGATAAACGAAATTGTGTCTTTTCGCTT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis