Browse Element(s) Details


Os.24831.2.S1_at

Description gb:CA762769
DB_XREF= gi:25806808
DB_XREF=BR060009A10F06.ab1
CLONE=BR060009A10F06.ab1
TID=Os.24831.2
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.24831 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OJ1014_G12.17 (OJ1014_G12.17), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g238405/11retrotransposon protein, putative, unclassified
LOC_Os07g354405/11retrotransposon protein, putative, unclassified
LOC_Os07g478904/11retrotransposon protein, putative, unclassified
LOC_Os06g327704/11retrotransposon protein, putative, unclassified
LOC_Os12g301003/11retrotransposon protein, putative, unclassified
LOC_Os04g138402/11retrotransposon protein, putative, unclassified
LOC_Os09g090001/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g143401/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g23810OsAffx.15220.1.S1_s_at11/119+14187487..14189993hypothetical protein
LOC_Os09g23810OsAffx.15220.2.S1_s_at7/119+14187487..14189993hypothetical protein
LOC_Os09g23820OsAffx.17866.1.S1_x_at11/119+14193356..14195589Cytochrome P450 family protein, expressed
LOC_Os09g23820OsAffx.29488.1.S1_x_at1/119+14193356..14195589Cytochrome P450 family protein, expressed
LOC_Os09g23830Os.26886.3.S1_x_at4/119+14203203..14205387transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g23840Os.24831.1.S1_x_at6/119+14208346..14212495retrotransposon protein, putative, unclassified
LOC_Os09g23840Os.24831.3.S1_x_at6/119+14208346..14212495retrotransposon protein, putative, unclassified
LOC_Os09g23840Os.24831.2.S1_at5/119+14208346..14212495retrotransposon protein, putative, unclassified
LOC_Os09g23840Os.24831.4.S1_x_at2/119+14208346..14212495retrotransposon protein, putative, unclassified
LOC_Os09g23840Os.55127.1.S1_at1/119+14208346..14212495retrotransposon protein, putative, unclassified
LOC_Os09g23850OsAffx.20733.1.A1_x_at2/119+14217622..14222961retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g23860Os.45173.1.S1_x_at1/119+14225130..14228705retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g23870Os.26886.1.S1_x_at8/119+14229942..14232417transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g23870OsAffx.16244.1.S1_x_at1/119+14229942..14232417transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g23870Os.47999.3.S1_x_at1/119+14229942..14232417transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g23870OsAffx.20733.1.S1_x_at1/119+14229942..14232417transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g23870OsAffx.8338.1.S1_x_at1/119+14229942..14232417transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24831.2.S1_at--905--197Chr12:18003112..18003135 (24 bp)
ATTTGTGGTTTTCAGTTCGCTACCT
LOC_Os12g30100
Os.24831.2.S1_at--412--6816Chr12:18003118..18003142 (25 bp)
GTTTTCAGTTCGCTACCTATCATTG
LOC_Os12g30100
Os.24831.2.S1_at--531--10536Chr08:6372090..6372114 (25 bp)
TTCAGTTCGCTACCTATCATTGTGT
NONE
Os.24831.2.S1_at--41--3457Chr12:18003123..18003172 (25 bp)
CAGTTCGCTACCTATCATTGTGTAA
LOC_Os12g30100
Os.24831.2.S1_at--509--6715Chr08:6372094..6372118 (25 bp)
GTTCGCTACCTATCATTGTGTAATC
NONE
Os.24831.2.S1_at--985--9331Chr08:6372096..6372120 (25 bp)
TCGCTACCTATCATTGTGTAATCGA
NONE
Os.24831.2.S1_at--814--10531Chr08:6372195..6372219 (25 bp)
TTCATGTTGAAGATACAATGTACCG
NONE
Os.24831.2.S1_at--418--8275Chr12:20293402..20293425 (24 bp)
GGCAGTGCCTCGTATTCTTGTAATA
NONE
Os.24831.2.S1_at--959--3453Chr12:20293404..20293425 (22 bp)
CAGTGCCTCGTATTCTTGTAATATG
NONE
Os.24831.2.S1_at--710--4452Chr08:6372254..6372278 (25 bp)
GCCTCGTATTCTTGTAATATGGGAG
NONE
Os.24831.2.S1_at--996--23942Chr12:18525279..18525303 (25 bp)
AAAAACAAGTTCTATGAGGACTCTT
NONE
Target Sequence 
ATTTGTGGTTTTCAGTTCGCTACCTATCATTGTGTAATCGAAAGTTTGCAGCAATCATGTAATACATAAATATATTCAGG
TCTATAAACAGTGAGCCTGCTATGCTTATGGATGATTCATGTTGAAGATACAATGTACCGATGTTAAGCCCCTTCCCTTT
TTGTTTAAGGCAGTGCCTCGTATTCTTGTAATATGGGAGAAATGTGTAATAAAAACAAGTTCTATGAGGACTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24831.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis