Browse Element(s) Details


OsAffx.17866.1.S1_x_at

Description tigr:9637.m02044
TID=OsAffx.17866.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Cytochrome P450
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2382011/11Cytochrome P450 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g23790NANA9+14169611..14175766retrotransposon protein, putative, unclassified
LOC_Os09g23800NANA9+14176383..14179649retrotransposon protein, putative, unclassified
LOC_Os09g23810OsAffx.15220.1.S1_s_at11/119+14187487..14189993hypothetical protein
LOC_Os09g23810OsAffx.15220.2.S1_s_at7/119+14187487..14189993hypothetical protein
LOC_Os09g23820OsAffx.17866.1.S1_x_at11/119+14193356..14195589Cytochrome P450 family protein, expressed
LOC_Os09g23820OsAffx.29488.1.S1_x_at1/119+14193356..14195589Cytochrome P450 family protein, expressed
LOC_Os09g23830Os.26886.3.S1_x_at4/119+14203203..14205387transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g23840Os.24831.1.S1_x_at6/119+14208346..14212495retrotransposon protein, putative, unclassified
LOC_Os09g23840Os.24831.3.S1_x_at6/119+14208346..14212495retrotransposon protein, putative, unclassified
LOC_Os09g23840Os.24831.2.S1_at5/119+14208346..14212495retrotransposon protein, putative, unclassified
LOC_Os09g23840Os.24831.4.S1_x_at2/119+14208346..14212495retrotransposon protein, putative, unclassified
LOC_Os09g23840Os.55127.1.S1_at1/119+14208346..14212495retrotransposon protein, putative, unclassified
LOC_Os09g23850OsAffx.20733.1.A1_x_at2/119+14217622..14222961retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17866.1.S1_x_at--609--4571Chr09:14193991..14194015 (25 bp)
GCGCTGCTGCTCACGTGGGCGATCA
LOC_Os09g23820
OsAffx.17866.1.S1_x_at--697--4831Chr09:14193983..14194007 (25 bp)
GCTCACGTGGGCGATCATGCTGCTC
LOC_Os09g23820
OsAffx.17866.1.S1_x_at--31--7571Chr09:14193975..14193999 (25 bp)
GGGCGATCATGCTGCTCGCCACCAA
LOC_Os09g23820
OsAffx.17866.1.S1_x_at--706--3991Chr09:14193945..14193969 (25 bp)
CGTGGCAGGAGAAGGCCCGCACCGA
LOC_Os09g23820
OsAffx.17866.1.S1_x_at--1132--2691Chr09:14193778..14193895 (25 bp)
AAGCTCACCGTGCTGCAGATGATCA
LOC_Os09g23820
OsAffx.17866.1.S1_x_at--75--9051Chr09:14193765..14193789 (25 bp)
TGCAGATGATCATCCAGGAGACGCT
LOC_Os09g23820
OsAffx.17866.1.S1_x_at--155--6231Chr09:14193707..14193731 (25 bp)
GATGGCGTTCGAGGACATCCAGCTC
LOC_Os09g23820
OsAffx.17866.1.S1_x_at--146--9391Chr09:14193699..14193723 (25 bp)
TCGAGGACATCCAGCTCGGCGGCCT
LOC_Os09g23820
OsAffx.17866.1.S1_x_at--479--1831Chr09:14193600..14193624 (25 bp)
ACGCGCACGAGTTCCGCCCGGAGAG
LOC_Os09g23820
OsAffx.17866.1.S1_x_at--114--1991Chr09:14193501..14193525 (25 bp)
ACTGCGTCGGCCAGGCGTACGCGCT
LOC_Os09g23820
OsAffx.17866.1.S1_x_at--38--891Chr09:14193471..14193495 (25 bp)
AGGCCAAGGTCGTCCTCGCCATGCT
LOC_Os09g23820
Target Sequence 
GCGCTGCTGCTCACGTGGGCGATCATGCTGCTCGCCACCAACCCGGCGTGGCAGGAGAAGGCCCGCACCGAGGTCGCCGC
CGTCTGCGGCGACCACCCGCCGTCCGCCGACCACCTCTCCAAGCTCACCGTGCTGCAGATGATCATCCAGGAGACGCTGC
GGCTGTACCCGCCGGCGACGCTGCTGCCGCGGATGGCGTTCGAGGACATCCAGCTCGGCGGCCTCCGGCTGCCGCGGGGG
CTGTCGGTGTGGATCCCGGTGCTGGCCATCCACCACGACGAGTCCATCTGGGGCCCCGACGCGCACGAGTTCCGCCCGGA
GAGGTTCGCGCCGGGCGCGCGCCGCCCGTCGGCCGCCGGCGCCGCCAGGTTCCTGCCGTTCGCCGCCGGCCCGCGCAACT
GCGTCGGCCAGGCGTACGCGCTCGTCGAGGCCAAGGTCGTCCTCGCCATGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17866.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis