Browse Element(s) Details


OsAffx.29488.1.S1_x_at

Description tigr:9636.m03334
TID=OsAffx.29488.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Cytochrome P450
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3330011/11Cytochrome P450 family protein
LOC_Os09g238201/11Cytochrome P450 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g33280NANA8+20602472..20608388Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os08g33290OsAffx.29487.1.S1_at11/118+20610596..20612662hypothetical protein
LOC_Os08g33300OsAffx.29488.1.S1_x_at11/118+20628692..20631011Cytochrome P450 family protein
LOC_Os08g33320Os.8712.1.S2_at11/118+20643254..20649547expressed protein
LOC_Os08g33320Os.8712.1.S1_at11/118+20643254..20649547expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009416biological_processresponse to light stimulus
GO:0009741biological_processresponse to brassinosteroid stimulus
GO:0016131biological_processbrassinosteroid metabolism
GO:0008395molecular_functionsteroid hydroxylase activity
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29488.1.S1_x_at--579--10552Chr09:14194015..14194039 (25 bp)
TTCTTCGCCGGCCACGAGACGTCGG
LOC_Os09g23820
OsAffx.29488.1.S1_x_at--707--3991Chr08:20629194..20629218 (25 bp)
CGTGGCAGGACAAGGCGCGCGCCGA
LOC_Os08g33300
OsAffx.29488.1.S1_x_at--751--2691Chr08:20629120..20629144 (25 bp)
AAGCTCGCCGTGCTCCAGATGGTGA
LOC_Os08g33300
OsAffx.29488.1.S1_x_at--755--7311Chr08:20629111..20629135 (25 bp)
GTGCTCCAGATGGTGATCAACGAGA
LOC_Os08g33300
OsAffx.29488.1.S1_x_at--714--9211Chr08:20629107..20629131 (25 bp)
TCCAGATGGTGATCAACGAGACGCT
LOC_Os08g33300
OsAffx.29488.1.S1_x_at--1053--8651Chr08:20628987..20629011 (25 bp)
TGTGGATCCCGGTGCTCGCCATCCA
LOC_Os08g33300
OsAffx.29488.1.S1_x_at--343--3471Chr08:20628923..20628947 (25 bp)
CAGGCCGGACAGGTTCGCGCCGGGA
LOC_Os08g33300
OsAffx.29488.1.S1_x_at--113--1991Chr08:20628846..20628870 (25 bp)
ACTGCGTCGGGCAGGCGTACGCCAT
LOC_Os08g33300
OsAffx.29488.1.S1_x_at--680--811Chr08:20628823..20628847 (25 bp)
ATGGTGGAGGCCAAGGTCGCGCTCG
LOC_Os08g33300
OsAffx.29488.1.S1_x_at--221--1871Chr08:20628762..20628786 (25 bp)
ACGAGTACCGGCACGCGCCGGTGAA
LOC_Os08g33300
OsAffx.29488.1.S1_x_at--1142--7751Chr08:20628743..20628767 (25 bp)
GGTGAACGTGCTCACGCTCCGGCCA
LOC_Os08g33300
Target Sequence 
TTCTTCGCCGGCCACGAGACGTCGGCGCTGCTCCTCACCTGGGCCATCATGCTGCTCGCCACGCACCCGGCGTGGCAGGA
CAAGGCGCGCGCCGAGGTCGCCGCCGTCTGCGGCGGCGGCGCGCCGTCGCCGGACAGCCTCCCGAAGCTCGCCGTGCTCC
AGATGGTGATCAACGAGACGCTGCGGCTGTACCCGCCGGCGACGCTGCTGCCGCGGATGGCGTTCGAGGACATCGAGCTC
GGCGGGGGCGCGCTCCGGGTGCCGAGTGGCGCGTCGGTGTGGATCCCGGTGCTCGCCATCCACCACGACGAGGGCGCGTG
GGGCCGCGACGCGCACGAGTTCAGGCCGGACAGGTTCGCGCCGGGACGGCCGCGGCCGCCGGCGGGGGCGTTCCTGCCGT
TCGCCGCCGGGCCGCGCAACTGCGTCGGGCAGGCGTACGCCATGGTGGAGGCCAAGGTCGCGCTCGCCATGCTCCTCTCC
AGCTTCCGCTTCGCCATCTCCGACGAGTACCGGCACGCGCCGGTGAACGTGCTCACGCTCCGGCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29488.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis