Browse Element(s) Details


OsAffx.8338.1.S1_x_at

Description gb:NM_195531.1
DB_XREF= gi:37532421
TID=OsAffx.8338.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNAa0082N11.4), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g283705/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g143743/11retrotransposon protein, putative, unclassified
LOC_Os04g110203/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g208603/11retrotransposon protein, putative, unclassified
LOC_Os07g290303/11hypothetical protein
LOC_Os03g341602/11hypothetical protein
LOC_Os01g268482/11hypothetical protein
LOC_Os08g084002/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g239902/11hypothetical protein
LOC_Os12g146002/11retrotransposon protein, putative, unclassified
LOC_Os08g181402/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g285901/11retrotransposon protein, putative, unclassified
LOC_Os10g424641/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g279001/11retrotransposon protein, putative, unclassified
LOC_Os09g238701/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g279401/11Calcineurin B-like protein 3, putative
LOC_Os03g337801/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g221101/11retrotransposon protein, putative, unclassified
LOC_Os07g183901/11retrotransposon protein, putative, unclassified
LOC_Os01g244201/11expressed protein
LOC_Os04g291901/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g159701/11hypothetical protein
LOC_Os11g081401/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g441801/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g246401/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g265301/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g150301/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g372901/11hypothetical protein
LOC_Os01g282441/11retrotransposon protein, putative, unclassified
LOC_Os10g186201/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g146291/11
LOC_Os05g265801/11retrotransposon protein, putative, unclassified
LOC_Os05g183901/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g406601/11hypothetical protein
LOC_Os07g168701/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g217401/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g110901/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g108901/11hypothetical protein
LOC_Os04g123301/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g019601/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g28320OsAffx.642.2.A1_at11/111+16190012..16190696hypothetical protein
LOC_Os01g28330Os.45173.1.S1_x_at1/111+16193735..16199832retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g28330Os.38764.1.S1_x_at1/111+16193735..16199832retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g28340Os.45173.1.S1_x_at2/111+16202678..16204780retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g28340OsAffx.21789.1.S1_at2/111+16202678..16204780retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g28350NANA1+16208088..16208372hypothetical protein
LOC_Os01g28360OsAffx.23429.1.S1_at11/111+16209612..16212549hypothetical protein
LOC_Os01g28370Os.46306.1.S1_x_at6/111+16213428..16227548transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g28370OsAffx.8338.1.S1_x_at5/111+16213428..16227548transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g28370Os.45976.1.S1_x_at4/111+16213428..16227548transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g28370Os.45976.1.S1_at2/111+16213428..16227548transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g28370OsAffx.19498.1.S1_at1/111+16213428..16227548transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g28370OsAffx.10020.1.S1_x_at1/111+16213428..16227548transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g28380NANA1+16230483..16232511hypothetical protein
LOC_Os01g28390Os.14491.2.S1_x_at4/111+16233118..16242007transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g28390Os.47463.1.S1_x_at4/111+16233118..16242007transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g28400OsAffx.11243.1.S1_at6/111+16244555..16246751transposon protein, putative, Mutator sub-class, expressed
LOC_Os01g28410OsAffx.11243.1.S1_at1/111+16247688..16247897hypothetical protein
LOC_Os01g28420Os.47463.1.S1_x_at10/111+16249969..16253437transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g28420Os.14491.2.S1_x_at3/111+16249969..16253437transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0005513biological_processdetection of calcium ion
GO:0019722biological_processcalcium-mediated signaling
GO:0005509molecular_functioncalcium ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.8338.1.S1_x_at--399--80182Chr12:8335166..8335303 (25 bp)
GGAGGACACCAACGGTGCTCCGGCG
LOC_Os12g14600
OsAffx.8338.1.S1_x_at--460--10012Chr11:15555062..15555088 (23 bp)
TAGCTAGCAGCGACGGAGGCCCACG
NONE
OsAffx.8338.1.S1_x_at--439--6013Chr10:10129090..10129109 (20 bp)
GAGAGAAGTCGATCCGAATCAAACT
NONE
OsAffx.8338.1.S1_x_at--98--52516Chr07:21451523..21451547 (25 bp)
GAATCAAACTCGAATCCACGGATTT
NONE
OsAffx.8338.1.S1_x_at--847--409129Chr12:4277201..4277558 (25 bp)
CGAATCCACGGATTTCCAAATGAAA
NONE
OsAffx.8338.1.S1_x_at--327--1614Chr12:19794994..19795015 (22 bp)
ACGGATTTCCAAATGAAATTAGCCG
NONE
OsAffx.8338.1.S1_x_at--124--676Chr12:12642087..12642108 (22 bp)
ATGAAATTAGCCGACGATTCCAAAA
NONE
OsAffx.8338.1.S1_x_at--186--419103Chr12:8196356..8196380 (25 bp)
CCCTCTATTGATTTCACCGGATCGG
LOC_Os12g14374
OsAffx.8338.1.S1_x_at--642--95322Chr12:8196359..8196383 (25 bp)
TCTATTGATTTCACCGGATCGGGAA
LOC_Os12g14374
OsAffx.8338.1.S1_x_at--935--87939Chr12:8196364..8196384 (21 bp)
TGATTTCACCGGATCGGGAAAAAGA
LOC_Os12g14374
OsAffx.8338.1.S1_x_at--496--5271Chr10:7663091..7663115 (25 bp)
GACGGTCGGACTTGGAAGGAGACGA
NONE
Target Sequence 
GGAGGACACCAACGGTGCTCCGGCGGTCTTCGGCGGCGGCGAAGCGGTGGACGGGGACGGCGACGACCTCGCGATCCCGA
TGGTGGCGACGGCGACCGACGACGGCGGCTGCAACGGCGGCCCGGCGCGGCTGAACCGACGGCAACGACGGCGACGGCTA
GGGCTACGCGGAGGCAGCGCTAGACGCGACGGCGGGCTAAGGCAAAGGTGGCGGCGGATAGAGGAGAGCTCGGGGGTGCT
TATAAAGGGGCTAGCTAGCAGCGACGGAGGCCCACGGCGACCGGCGGCGAGAAGGAAAGCTAGGGTTCGGAGGAGAGAAG
TCGATCCGAATCAAACTCGAATCCACGGATTTCCAAATGAAATTAGCCGACGATTCCAAAAGAGAAAAGGAAGAGGAGAT
CGAGAAGATCATTTCCCCTCTATTGATTTCACCGGATCGGGAAAAAGACGGTCGGACTTGGAAGGAGACGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.8338.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis