Browse Element(s) Details


OsAffx.11243.1.S1_at

Description gb:NM_193919.1
DB_XREF= gi:34914921
GEN=B1096D03.27
TID=OsAffx.11243.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) B1096D03.27 (B1096D03.27), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g284006/11transposon protein, putative, Mutator sub-class, expressed
LOC_Os01g284101/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g28370Os.46306.1.S1_x_at6/111+16213428..16227548transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g28370OsAffx.8338.1.S1_x_at5/111+16213428..16227548transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g28370Os.45976.1.S1_x_at4/111+16213428..16227548transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g28370Os.45976.1.S1_at2/111+16213428..16227548transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g28370OsAffx.19498.1.S1_at1/111+16213428..16227548transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g28370OsAffx.10020.1.S1_x_at1/111+16213428..16227548transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g28380NANA1+16230483..16232511hypothetical protein
LOC_Os01g28390Os.14491.2.S1_x_at4/111+16233118..16242007transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g28390Os.47463.1.S1_x_at4/111+16233118..16242007transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g28400OsAffx.11243.1.S1_at6/111+16244555..16246751transposon protein, putative, Mutator sub-class, expressed
LOC_Os01g28410OsAffx.11243.1.S1_at1/111+16247688..16247897hypothetical protein
LOC_Os01g28420Os.47463.1.S1_x_at10/111+16249969..16253437transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g28420Os.14491.2.S1_x_at3/111+16249969..16253437transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g28440NANA1+16256129..16259212transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g28450Os.418.1.S1_at11/111+16261359..16262183Pathogenesis-related protein PRB1-3 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11243.1.S1_at--486--2091Chr01:16246504..16246528 (25 bp)
ACATACCCTTGGACCATAATGACTA
LOC_Os01g28400
OsAffx.11243.1.S1_at--23--1471Chr01:16246618..16246639 (22 bp)
AGAAGGGACTAATTCCAGCTGTCAA
LOC_Os01g28400
OsAffx.11243.1.S1_at--981--9211Chr01:16246628..16246652 (25 bp)
TCCAGCTGTCAAGAAGGTATTCCCT
LOC_Os01g28400
OsAffx.11243.1.S1_at--1045--1011Chr01:16246642..16246666 (25 bp)
AGGTATTCCCTGACACAGAGCATAG
LOC_Os01g28400
OsAffx.11243.1.S1_at--317--1371Chr01:16246658..16246682 (25 bp)
AGAGCATAGGTTCTGTGTGAGACAC
LOC_Os01g28400
OsAffx.11243.1.S1_at--722--5971Chr01:16246676..16246700 (25 bp)
GAGACACCTGTACTCTAACTTTCAA
LOC_Os01g28400
OsAffx.11243.1.S1_at--430--9071Chr01:16247843..16247867 (25 bp)
TGCATTGCATGCTGCCGTCGATGCT
LOC_Os01g28410
OsAffx.11243.1.S1_at--274--3671Chr01:16247879..16247903 (25 bp)
CTTACCGCGCTTCACTTGATCTATG
NONE
OsAffx.11243.1.S1_at--1116--791Chr01:16247939..16247963 (25 bp)
ATGGGCGACGTCACGCGGTGTCCCC
NONE
OsAffx.11243.1.S1_at--124--8611Chr01:16248036..16248060 (25 bp)
TGGTCGCGACACCACTCATGGCTTG
NONE
OsAffx.11243.1.S1_at--977--851Chr01:16248053..16248077 (25 bp)
ATGGCTTGCAGTCCTCATCGGAGAA
NONE
Target Sequence 
ACATACCCTTGGACCATAATGACTAATAAGCAGAAGGGACTAATTCCAGCTGTCAAGAAGGTATTCCCTGACACAGAGCA
TAGGTTCTGTGTGAGACACCTGTACTCTAACTTTCAAGAAAANNNNNNNNNCNNNNNNNNGCNCNNANNNNCNNGNNNNG
AGGTGGTGGCTGCTGCTCCTGCTGCGATTGCGCCGCACCATGTCCTCCTGCTCCACCTTGGATGTGCACCCTACCGACCC
CCGCAAACCGGTGCTGCTATTGCCAACTTCGTCCCCTGCATTGCATGCTGCCGTCGATGCTCCCTGCATCCTCTTACCGC
GCTTCACTTGATCTATGCCACAACTGCCACCGCCGATGTCATCGCTTCGGGCATGGGCGACGTCACGCGGTGTCCCCGCA
CCGCCGCCGTCCTGACCGTCCTCATGGCCGCACCGCCACGCTTTTGTCATCGCCGTGCACTCCACCCGCTGGTCGCGACA
CCACTCATGGCTTGCAGTCCTCATCGGAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11243.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis