Browse Element(s) Details


OsAffx.21789.1.S1_at

Description gb:NM_190323.1
DB_XREF= gi:34907729
GEN=B1065G12.17
TID=OsAffx.21789.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) B1065G12.17 (B1065G12.17), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g479202/11hypothetical protein
LOC_Os01g283402/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g47870NANA3+27161183..27166403retrotransposon protein, putative, unclassified
LOC_Os03g47880NANA3+27168575..27169192retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g47890Os.38395.5.S1_at2/113+27169377..27172506Transposable element protein, putative, MuDR
LOC_Os03g47896Os.54843.1.S1_at11/113+27175431..27176458Ribosome inactivating protein, expressed
LOC_Os03g47896Os.46801.2.S1_x_at1/113+27175431..27176458Ribosome inactivating protein, expressed
LOC_Os03g47902Os.41415.1.S1_at1/113+27177453..27178448hypothetical protein
LOC_Os03g47910NANA3+27182027..27182788expressed protein
LOC_Os03g47920OsAffx.25616.4.S1_at11/113+27184508..27188184hypothetical protein
LOC_Os03g47920OsAffx.21789.1.S1_at2/113+27184508..27188184hypothetical protein
LOC_Os03g47920OsAffx.25616.2.S1_x_at1/113+27184508..27188184hypothetical protein
LOC_Os03g47930Os.2860.1.S1_at11/113+27187647..27200141expressed protein
LOC_Os03g47940Os.12170.1.S1_at11/113+27201111..27205741GDSL-like Lipase/Acylhydrolase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21789.1.S1_at--875--8671Chr01:39628004..39628028 (25 bp)
TGTCCCGTGTCCGTAAAGGAACCAG
NONE
OsAffx.21789.1.S1_at--590--7331Chr01:39628011..39628035 (25 bp)
TGTCCGTAAAGGAACCAGTCCCACT
NONE
OsAffx.21789.1.S1_at--974--2391Chr01:39628048..39628072 (25 bp)
AAAAGTGACCTGAATTTAATCCGTG
NONE
OsAffx.21789.1.S1_at--270--5812Chr01:39628054..39628078 (25 bp)
GACCTGAATTTAATCCGTGACCCTC
NONE
OsAffx.21789.1.S1_at--208--8954Chr01:39628058..39628082 (25 bp)
TGAATTTAATCCGTGACCCTCAACC
NONE
OsAffx.21789.1.S1_at--27--152Chr01:39628061..39628085 (25 bp)
ATTTAATCCGTGACCCTCAACCGCA
NONE
OsAffx.21789.1.S1_at--1093--1791Chr01:39628073..39628097 (25 bp)
ACCCTCAACCGCACAACCGGTATGA
NONE
OsAffx.21789.1.S1_at--110--41910Chr12:23314605..23314629 (25 bp)
CCCCGAACTATTCAAACCAGTGCAA
NONE
OsAffx.21789.1.S1_at--462--41111Chr12:25832961..25832985 (25 bp)
CGAACTATTCAAACCAGTGCAATTT
NONE
OsAffx.21789.1.S1_at--120--9711Chr01:39628111..39628135 (25 bp)
TCAAACCAGTGCAATTTGAATTCCT
NONE
OsAffx.21789.1.S1_at--149--10451Chr01:39628126..39628150 (25 bp)
TTGAATTCCTTAGCGGTTTTGGACG
NONE
Target Sequence 
TGTCCCGTGTCCGTAAAGGAACCAGTCCCACTTTAACTCCCTTAAAAAGTGACCTGAATTTAATCCGTGACCCTCAACCG
CACAACCGGTATGACCCCCCGAACTATTCAAACCAGTGCAATTTGAATTCCTTAGCGGTTTTGGACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21789.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis