Browse Element(s) Details


Os.12170.1.S1_at

Description gb:AK099266.1
DB_XREF= gi:32984475
TID=Os.12170.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12170 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023013F22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023013F22, full insert sequence.
FL= gb:AK099266.1 gb:AK060516.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4794011/11GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os09g256201/11S-adenosylmethionine decarboxylase proenzyme, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g47896Os.54843.1.S1_at11/113+27175431..27176458Ribosome inactivating protein, expressed
LOC_Os03g47896Os.46801.2.S1_x_at1/113+27175431..27176458Ribosome inactivating protein, expressed
LOC_Os03g47902Os.41415.1.S1_at1/113+27177453..27178448hypothetical protein
LOC_Os03g47910NANA3+27182027..27182788expressed protein
LOC_Os03g47920OsAffx.25616.4.S1_at11/113+27184508..27188184hypothetical protein
LOC_Os03g47920OsAffx.21789.1.S1_at2/113+27184508..27188184hypothetical protein
LOC_Os03g47920OsAffx.25616.2.S1_x_at1/113+27184508..27188184hypothetical protein
LOC_Os03g47930Os.2860.1.S1_at11/113+27187647..27200141expressed protein
LOC_Os03g47940Os.12170.1.S1_at11/113+27201111..27205741GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os03g47960Os.55210.1.S1_at10/113+27214733..27217751HECT-domain-containing protein, putative, expressed
LOC_Os03g47970Os.2857.1.S1_at11/113+27218880..27223289GATA transcription factor 27, putative, expressed
LOC_Os03g47980Os.50357.1.S1_at10/113+27225595..27231444expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006596biological_processpolyamine biosynthesis
GO:0004014molecular_functionadenosylmethionine decarboxylase activity
GO:0016298molecular_functionlipase activity
GO:0016789molecular_functioncarboxylic ester hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12170.1.S1_at--251--4171Chr03:27205165..27205185 (21 bp)
CGCCGGTTTCTTCGAGTCTCGGAGA
LOC_Os03g47940
Os.12170.1.S1_at--751--3531Chr03:27205362..27205386 (25 bp)
CATCCATCCGTTTCCTGAGAATGAC
LOC_Os03g47940
Os.12170.1.S1_at--457--5271Chr03:27205380..27205404 (25 bp)
GAATGACGGACGCATGCACAGCCAA
LOC_Os03g47940
Os.12170.1.S1_at--1128--2471Chr03:27205403..27205427 (25 bp)
AACAGCGCTACTAGCTTCTTGCTCT
LOC_Os03g47940
Os.12170.1.S1_at--951--9531Chr03:27205448..27205472 (25 bp)
TCTACTCTACTCCTGTGAACTTAAT
LOC_Os03g47940
Os.12170.1.S1_at--877--10251Chr03:27205487..27205511 (25 bp)
TTTGTTTCTCCTGCTAGCGATCGAT
LOC_Os03g47940
Os.12170.1.S1_at--291--6392Chr03:27205505..27205529 (25 bp)
GATCGATCGAGTAGCCGCCGTACGT
LOC_Os03g47940
Os.12170.1.S1_at--362--7912Chr03:27205548..27205572 (25 bp)
GGTTGCCCTGCTTGTTTAGTTTTGT
LOC_Os03g47940
Os.12170.1.S1_at--237--10411Chr03:27205567..27205591 (25 bp)
TTTTGTTTTTCTCTCTATCGTGCAG
LOC_Os03g47940
Os.12170.1.S1_at--608--8732Chr03:27205659..27205683 (25 bp)
TGTCATGTACATGCGCTTGGATTGT
LOC_Os03g47940
Os.12170.1.S1_at--836--8571Chr03:27205676..27205700 (25 bp)
TGGATTGTACTATCCCGCTAGCAAT
LOC_Os03g47940
Target Sequence 
CGCCGGTTTCTTCGAGTCTCGGAGAGCGTGCTGCGGGACGGGGACGATCGAGACGTCGGTGCNGTGCAACCAGGNTNCGG
TGGGGACNGTGCGCCAACGCGACGGGGTACGTGTTCTGGGACGGATTCCACCCCACGGACGCCGCCAACAAGGTGCTCGC
CGACGCCCTCCTCCTCCAGGGCCTCCAGCTCATCTCCTGATCCATCCATCCGTTTCCTGAGAATGACGGACGCATGCACA
GCCAACAGCGCTACTAGCTTCTTGCTCTCGCTTCTGCTTCTCAACTACTCTACTCTACTCCTGTGAACTTAATTAGTTAA
GTTGCTNTTTGTTTCTCCTGCTAGCGATCGATCGAGTAGCCGCCGTACGTGCTGCATGCTGCTGTTTCGGTTGCCCTGCT
TGTTTAGTTTTGTTTTTCTCTCTATCGTGCAGTCATGTGCACGGGCTTGGGCTTAGTTGTTTTGCTGTAGTATGAATGAA
CTGCTTGCTTGGTGTAATATGTCATGTACATGCGCTTGGATTGTACTATCCCGCTAGCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12170.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis