Browse Element(s) Details


Os.50357.1.S1_at

Description gb:AK120860.1
DB_XREF= gi:37990483
TID=Os.50357.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50357 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023024G08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023024G08, full insert sequence.
FL= gb:AK120860.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4798010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g47940Os.12170.1.S1_at11/113+27201111..27205741GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os03g47960Os.55210.1.S1_at10/113+27214733..27217751HECT-domain-containing protein, putative, expressed
LOC_Os03g47970Os.2857.1.S1_at11/113+27218880..27223289GATA transcription factor 27, putative, expressed
LOC_Os03g47980Os.50357.1.S1_at10/113+27225595..27231444expressed protein
LOC_Os03g47990Os.54202.1.S1_at11/113+27232247..27235321OB-fold nucleic acid binding domain containing protein, expressed
LOC_Os03g48000Os.27805.1.S1_at10/113+27237026..27243529magnesium transporter CorA-like family protein, putative, expressed
LOC_Os03g48010OsAffx.13399.1.S1_at11/113+27246577..27249455expressed protein
LOC_Os03g48030Os.14520.1.S1_at11/113+27249900..27252172HPP family protein, expressed
LOC_Os03g48020Os.54898.1.S1_at11/113+27251268..27253126expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50357.1.S1_at--880--8051Chr03:27226291..27226315 (25 bp)
GGAGAAACCATCACGAACTCTTCAA
LOC_Os03g47980
Os.50357.1.S1_at--309--3451Chr03:27226258..27226282 (25 bp)
CAGTTTGTGTCTATCTTCTTGGCTA
LOC_Os03g47980
Os.50357.1.S1_at--836--10551Chr03:27226243..27226267 (25 bp)
TTCTTGGCTAAGTTCACCCTCATGA
LOC_Os03g47980
Os.50357.1.S1_at--63--5391Chr03:27226157..27226178 (22 bp)
GAAGAATGGGCTACGCACATCTCTC
LOC_Os03g47980
Os.50357.1.S1_at--102--2951Chr03:27225988..27226012 (25 bp)
AAGGCGATCTGCAGTATCACGGAGA
LOC_Os03g47980
Os.50357.1.S1_at--668--6231Chr03:27225963..27225987 (25 bp)
GATGGATTGCGGACAAGTCCTCCTT
LOC_Os03g47980
Os.50357.1.S1_at--642--6331Chr03:27225928..27225952 (25 bp)
GATGCTTCACTGACCGAAAACACCA
LOC_Os03g47980
Os.50357.1.S1_at--310--71Chr03:27225856..27225880 (25 bp)
ATTGCTGACCTGTGAGTTTGGAATA
LOC_Os03g47980
Os.50357.1.S1_at--1090--5091Chr03:27225769..27225793 (25 bp)
GCACGAGATCATCCGGAAGTCTGTT
LOC_Os03g47980
Os.50357.1.S1_at--528--6951Chr03:27225682..27225706 (25 bp)
GTAGATCACTACTCACATAGCTCTG
LOC_Os03g47980
Os.50357.1.S1_at--212--6491Chr03:27225595..27225619 (25 bp)
GATACGGTGCTAGAGGTTTCTGATC
NONE
Target Sequence 
GGAGAAACCATCACGAACTCTTCAAAACTCGAGCAGTTTGTGTCTATCTTCTTGGCTAAGTTCACCCTCATGAAAGATGA
CATTGAAAGACATGGGATTCAAACAGAAGCTGATTCCTCAGTTGAGGGTGTTTCTTTGAAGAATGGGCTACGCACATCTC
TCAAGGCGATCTGCAGTATCACGGAGAGATGGATTGCGGACAAGTCCTCCTTGGGCAAAGAAGATGCTTCACTGACCGAA
AACACCATTGAAAATGCTAAAGAGCTGCTGACTTTCTGCCGGCGTGCAATGGGTATTGCTGACCTGTGAGTTTGGAATAC
GGAGGTTTTGACGTAGAGGGCAACCACGTACGTGAAAAATTACTAGGAGTTTTGCTGTATAGCACGAGATCATCCGGAAG
TCTGTTAAAACCAACTAGGAGTTTTGCTGTAGAGGATCACAGTGATGCATAGATCATCAGTTGCTAAAGTAGATCACTAC
TCACATAGCTCTGCCAATTTACATTGATGTGGTTACATTATTGGTGCTAGCGATGTAATGAACGCGCATAAAAATGATAC
GGTGCTAGAGGTTTCTGATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50357.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis