Browse Element(s) Details


Os.2857.1.S1_at

Description gb:AK105025.2
DB_XREF= gi:42821640
TID=Os.2857.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.2857 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-011-G08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-011-G08, full insert sequence.
FL= gb:AK105025.2
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4797011/11GATA transcription factor 27, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g47930Os.2860.1.S1_at11/113+27187647..27200141expressed protein
LOC_Os03g47940Os.12170.1.S1_at11/113+27201111..27205741GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os03g47960Os.55210.1.S1_at10/113+27214733..27217751HECT-domain-containing protein, putative, expressed
LOC_Os03g47970Os.2857.1.S1_at11/113+27218880..27223289GATA transcription factor 27, putative, expressed
LOC_Os03g47980Os.50357.1.S1_at10/113+27225595..27231444expressed protein
LOC_Os03g47990Os.54202.1.S1_at11/113+27232247..27235321OB-fold nucleic acid binding domain containing protein, expressed
LOC_Os03g48000Os.27805.1.S1_at10/113+27237026..27243529magnesium transporter CorA-like family protein, putative, expressed
LOC_Os03g48010OsAffx.13399.1.S1_at11/113+27246577..27249455expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2857.1.S1_at--732--3011Chr03:27219473..27219497 (25 bp)
AATGCAGCTGTCTCTCCGAGTGGAA
LOC_Os03g47970
Os.2857.1.S1_at--388--7571Chr03:27219309..27219333 (25 bp)
GGGCGACAGCACTCCGGCAAATGAA
LOC_Os03g47970
Os.2857.1.S1_at--843--9911Chr03:27219142..27219166 (25 bp)
TACTGATTCTCCTCAAGTGTACAAT
LOC_Os03g47970
Os.2857.1.S1_at--912--2331Chr03:27219076..27219100 (25 bp)
AAAGAGCCTGATTGGTGCCTGTTGT
LOC_Os03g47970
Os.2857.1.S1_at--577--7251Chr03:27219062..27219086 (25 bp)
GTGCCTGTTGTGTAAACCCCTCATT
LOC_Os03g47970
Os.2857.1.S1_at--1141--1791Chr03:27219047..27219071 (25 bp)
ACCCCTCATTCTCATGACATCTAAG
LOC_Os03g47970
Os.2857.1.S1_at--138--6491Chr03:27219023..27219047 (25 bp)
GATAGCACATCAAGCAGACTGTCAT
LOC_Os03g47970
Os.2857.1.S1_at--307--1391Chr03:27219008..27219032 (25 bp)
AGACTGTCATGTACTTCCGGCTTTG
LOC_Os03g47970
Os.2857.1.S1_at--534--10791Chr03:27218963..27218987 (25 bp)
TTGTCTGATGGTGCTTAGTGTCCCT
LOC_Os03g47970
Os.2857.1.S1_at--735--3611Chr03:27218940..27218964 (25 bp)
CTTCCTAACTACTACGCCTGTAAAG
LOC_Os03g47970
Os.2857.1.S1_at--634--10211Chr03:27218887..27218911 (25 bp)
TATTAATGTGTCGTCTCTGTCTTTC
LOC_Os03g47970
Target Sequence 
AATGCAGCTGTCTCTCCGAGTGGAATCGACAACAAGGAATTGGTGGTACCNAACCCTGNAAACATTACCGCANAGCCNTG
GNGAAGTCATGGGCGACAGCACTCCGGCAAATGAAGCCGAGATANGGAGCGCCANAAGGCGCAGTCACNATAAGTTTATG
TTTAACCTGTCATGATTGAAACCNAAAGATTCTGGATTCTTTGCCTNACANGGCTATACAGCTAAACATCACNATAGAAG
GTCTTTTTCCTGACCNAAGTATACTGATTCTCCTCAAGTGTACAATTCTTGCTTGCCAGCACATGTAAATGTAATTGTAA
TTAACATAAAGAGCCTGATTGGTGCCTGTTGTGTAAACCCCTCATTCTCATGACATCTAAGATAGCACATCAAGCAGACT
GTCATGTACTTCCGGCTTTGGAGCTGCTTCTGAAGGGGAGTTGTCTGATGGTGCTTAGTGTCCCTTCCTAACTACTACGC
CTGTAAAGTTGTACCNACTGATCCTTGTACAGTTTGTATTAATGTGTCGTCTCTGTCTTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2857.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis