Browse Element(s) Details


OsAffx.13399.1.S1_at

Description tigr:9631.m04672
TID=OsAffx.13399.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative exostoses
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4801011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g47970Os.2857.1.S1_at11/113+27218880..27223289GATA transcription factor 27, putative, expressed
LOC_Os03g47980Os.50357.1.S1_at10/113+27225595..27231444expressed protein
LOC_Os03g47990Os.54202.1.S1_at11/113+27232247..27235321OB-fold nucleic acid binding domain containing protein, expressed
LOC_Os03g48000Os.27805.1.S1_at10/113+27237026..27243529magnesium transporter CorA-like family protein, putative, expressed
LOC_Os03g48010OsAffx.13399.1.S1_at11/113+27246577..27249455expressed protein
LOC_Os03g48030Os.14520.1.S1_at11/113+27249900..27252172HPP family protein, expressed
LOC_Os03g48020Os.54898.1.S1_at11/113+27251268..27253126expressed protein
LOC_Os03g48040Os.50976.1.S1_at10/113+27259030..27262075ferredoxin family protein, expressed
LOC_Os03g48050Os.22656.1.A1_at11/113+27263450..27265346RNA methyltransferase, TrmH family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0010087biological_processvascular tissue development (sensu Tracheophyta)
GO:0016337biological_processcell-cell adhesion
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0035251molecular_functionUDP-glucosyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13399.1.S1_at--844--6131Chr03:27248835..27248859 (25 bp)
GAGGGAGCACCCTGACAGGATCATT
LOC_Os03g48010
OsAffx.13399.1.S1_at--969--7951Chr03:27248852..27248876 (25 bp)
GGATCATTGGGTACTATCCACGCCT
LOC_Os03g48010
OsAffx.13399.1.S1_at--955--2031Chr03:27248864..27248888 (25 bp)
ACTATCCACGCCTTTCTGAAGGCAG
LOC_Os03g48010
OsAffx.13399.1.S1_at--340--2931Chr03:27248882..27248906 (25 bp)
AAGGCAGCCCACTGGAATACCGCAA
LOC_Os03g48010
OsAffx.13399.1.S1_at--582--1791Chr03:27248900..27248924 (25 bp)
ACCGCAATGAGAGGTATGCTCGGCA
LOC_Os03g48010
OsAffx.13399.1.S1_at--47--6911Chr03:27248913..27248937 (25 bp)
GTATGCTCGGCAACAAGGAGGTTAT
LOC_Os03g48010
OsAffx.13399.1.S1_at--1107--9811Chr03:27248937..27248961 (25 bp)
TAACATGGTACTCACAGGCGCAGCA
LOC_Os03g48010
OsAffx.13399.1.S1_at--873--8391Chr03:27248953..27248977 (25 bp)
GGCGCAGCATTTATGGACCATGGTT
LOC_Os03g48010
OsAffx.13399.1.S1_at--686--6231Chr03:27249265..27249289 (25 bp)
GATGGCTGGGATGTATAGTGACACA
LOC_Os03g48010
OsAffx.13399.1.S1_at--681--6491Chr03:27249298..27249322 (25 bp)
GATAGCTTTATTCCTGAGACTCAAA
LOC_Os03g48010
OsAffx.13399.1.S1_at--429--5711Chr03:27249315..27249339 (25 bp)
GACTCAAATAGACTGATTAGCCAAG
LOC_Os03g48010
Target Sequence 
GAGGGAGCACCCTGACAGGATCATTGGGTACTATCCACGCCTTTCTGAAGGCAGCCCACTGGAATACCGCAATGAGAGGT
ATGCTCGGCAACAAGGAGGTTATAACATGGTACTCACAGGCGCAGCATTTATGGACCATGGTTTGGCCTTCAAGAAATAT
TGGAGCAAGGAAGCTGAGGTAGGAAGACAGATTGTAGACAGTTTCTTCAATTGTGAGGATATCCTTCTAAATTTCTTGTT
TGCAAATGCAAGCTTGACAAGCACAGTGGAGTATGTAAAGCCAGCTTGGGCAATTGATATGTCCAAGTTCTCAGGAGTTG
CCATCAGCCGAAACACACAAGCACACTATCATGTTAGGAGCAAATGCCTGGCTAAATTTTCAGAAATATATGGAAATTTA
ACTGCTAAGAGGTTCTTTAACAGCCGAGGTGATGGCTGGGATGTATAGTGACACATATTAGTGGATAGCTTTATTCCTGA
GACTCAAATAGACTGATTAGCCAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13399.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis