Browse Element(s) Details


Os.14520.1.S1_at

Description gb:AK068538.1
DB_XREF= gi:32978555
TID=Os.14520.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.14520 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013152H14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013152H14, full insert sequence.
FL= gb:AK068538.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4803011/11HPP family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g47980Os.50357.1.S1_at10/113+27225595..27231444expressed protein
LOC_Os03g47990Os.54202.1.S1_at11/113+27232247..27235321OB-fold nucleic acid binding domain containing protein, expressed
LOC_Os03g48000Os.27805.1.S1_at10/113+27237026..27243529magnesium transporter CorA-like family protein, putative, expressed
LOC_Os03g48010OsAffx.13399.1.S1_at11/113+27246577..27249455expressed protein
LOC_Os03g48030Os.14520.1.S1_at11/113+27249900..27252172HPP family protein, expressed
LOC_Os03g48020Os.54898.1.S1_at11/113+27251268..27253126expressed protein
LOC_Os03g48040Os.50976.1.S1_at10/113+27259030..27262075ferredoxin family protein, expressed
LOC_Os03g48050Os.22656.1.A1_at11/113+27263450..27265346RNA methyltransferase, TrmH family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009706cellular_componentchloroplast inner membrane
GO:0016021cellular_componentintegral to membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14520.1.S1_at--506--10311Chr03:27250682..27250706 (25 bp)
TTTCTGCATCCATAGCATTCATGAC
LOC_Os03g48030
Os.14520.1.S1_at--950--10531Chr03:27250665..27250689 (25 bp)
TTCATGACAATTACAGGCGCCTCAC
LOC_Os03g48030
Os.14520.1.S1_at--448--2711Chr03:27250485..27250509 (25 bp)
AAGCTTGCCTCTCTTGTTTATTGAT
LOC_Os03g48030
Os.14520.1.S1_at--618--791Chr03:27250462..27250486 (25 bp)
ATGGTCCAAAGTTTCACCACTTGCA
LOC_Os03g48030
Os.14520.1.S1_at--407--2071Chr03:27250444..27250468 (25 bp)
ACTTGCAACTCTGGTATGCCCTTTT
LOC_Os03g48030
Os.14520.1.S1_at--307--5011Chr03:27250409..27250433 (25 bp)
GCAGGCTGCATAATTCTTTGCTTGA
LOC_Os03g48030
Os.14520.1.S1_at--102--6811Chr03:27250255..27250279 (25 bp)
GTTTTGATTCAAGCGGTGCATTACT
LOC_Os03g48030
Os.14520.1.S1_at--954--10791Chr03:27250198..27250222 (25 bp)
TTGTACCACAATTTGCTAGAACTGC
LOC_Os03g48030
Os.14520.1.S1_at--753--1251Chr03:27250099..27250123 (25 bp)
AGATTGATCGATACCTGATTGTGAA
LOC_Os03g48030
Os.14520.1.S1_at--106--2252Chr09:11609138..11609284 (24 bp)
AAATTCCTTCTTTTGTGATTCATAA
NONE
Os.14520.1.S1_at--526--7411Chr03:27249979..27250003 (25 bp)
GTGATTCATAATTGCTTTCTTCATG
LOC_Os03g48030
Target Sequence 
TTTCTGCATCCATAGCATTCATGACAATTACAGGCGCCTCACACCCTCCAGCTGCAAGCTTGCCTCTCTTGTTTATTGAT
GGTCCAAAGTTTCACCACTTGCAACTCTGGTATGCCCTTTTTCCTGGANCTGCAGGCTGCATAATTCTTTGCTTGATTCA
AGANGTGGTGATTTACCTGAAGAAGAATTTCAAGTTTTGATTCAAGCGGTGCATTACTTNTCGTAGCAATGACATGACTA
AAATTCAAGATTGTACCACAATTTGCTAGAACTGCATTGGGGAGAAATGGAGGAAATGCAGATTTAGTTTCCNTTGGTCT
TATTTACTAAACANGGAAGAGGAGAAAAAGCAGATTGATCGATACCTGATTGTGAATTTGTGATCACAGTGCAGAACATG
CAAATATGAAGTACATACCAATATCTCATTTAATGAAATCTGATAAGTGTACAAANAAAATTCCTTCTTTTGTGATTCAT
AATTGCTTTCTTCATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14520.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis