Browse Element(s) Details


Os.50976.1.S1_at

Description gb:AK059896.1
DB_XREF= gi:32969914
TID=Os.50976.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50976 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023143H16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-208-F05, full insert sequence.
FL= gb:AK098989.1 gb:AK059896.1 gb:AK099303.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4804010/11ferredoxin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g47990Os.54202.1.S1_at11/113+27232247..27235321OB-fold nucleic acid binding domain containing protein, expressed
LOC_Os03g48000Os.27805.1.S1_at10/113+27237026..27243529magnesium transporter CorA-like family protein, putative, expressed
LOC_Os03g48010OsAffx.13399.1.S1_at11/113+27246577..27249455expressed protein
LOC_Os03g48030Os.14520.1.S1_at11/113+27249900..27252172HPP family protein, expressed
LOC_Os03g48020Os.54898.1.S1_at11/113+27251268..27253126expressed protein
LOC_Os03g48040Os.50976.1.S1_at10/113+27259030..27262075ferredoxin family protein, expressed
LOC_Os03g48050Os.22656.1.A1_at11/113+27263450..27265346RNA methyltransferase, TrmH family protein, expressed
LOC_Os03g48060Os.2858.1.S1_at11/113+27283376..27287077glutamine amidotransferase class-I family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0009416biological_processresponse to light stimulus
GO:0009767biological_processphotosynthetic electron transport
GO:0009570cellular_componentchloroplast stroma
GO:0009055molecular_functionelectron carrier activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50976.1.S1_at--752--7291NONE
GTGCCGCCATGGTTGCTGTACTAGC
NONE
Os.50976.1.S1_at--44--3891Chr03:27260569..27260593 (25 bp)
CTGTACTAGCTGTGCGGTTCGGATA
LOC_Os03g48040
Os.50976.1.S1_at--67--651Chr03:27261168..27261192 (25 bp)
ATGCATTGTTGTGTGTTGGTTTTCC
LOC_Os03g48040
Os.50976.1.S1_at--931--6611Chr03:27261182..27261206 (25 bp)
GTTGGTTTTCCAACTTCTGATGTTG
LOC_Os03g48040
Os.50976.1.S1_at--987--5351Chr03:27261224..27261382 (25 bp)
GAAGATGAGGTCTACTGGCTCCAGT
LOC_Os03g48040
Os.50976.1.S1_at--1014--6511Chr03:27261389..27261412 (24 bp)
GATATTTCGCACGAGGACCTGTTGA
LOC_Os03g48040
Os.50976.1.S1_at--888--3451Chr03:27261774..27261798 (25 bp)
CAGTCGGGAGCTCATGTTGTCTTAA
LOC_Os03g48040
Os.50976.1.S1_at--771--10371Chr03:27261829..27261853 (25 bp)
TTTTCCTCAGCTCACAATTTTCCAT
LOC_Os03g48040
Os.50976.1.S1_at--700--3131Chr03:27261844..27261868 (25 bp)
AATTTTCCATCTTCAGTGCTGTTAC
LOC_Os03g48040
Os.50976.1.S1_at--952--9891Chr03:27261866..27261890 (25 bp)
TACTCTGTTAGCGATTGTTTGGCAT
LOC_Os03g48040
Os.50976.1.S1_at--1057--3091Chr03:27261916..27261940 (25 bp)
AATACCATTTTCTAGTTCGCACCTG
LOC_Os03g48040
Target Sequence 
GTGCCGCCATGGTTGCTGTACTAGCTGTGCGGTTCGGATAAAGTCAGGACAAATAAGACAACCTGAAGCACTTGGAATAT
CTGCTGAACTAAAAGATAAGGGCTATGCATTGTTGTGTGTTGGTTTTCCAACTTCTGATGTTGAAGTTGAAACACAAGAT
GAAGATGAGGTCTACTGGCTCCAGTTTGGAAGATATTTCGCACGAGGACCTGTTGAAAGGGATGATTATGCACTGGAGCT
TGCAATGGGTGATGAGTGAGCCGTGTCTAAAGNGTGGTGTTTGCAGTCGGGAGCTCATGTTGTCTTAAGGACTTTCTTTG
AAAGTGGAGAAAGGGGCTTTTTTCCTCAGCTCACAATTTTCCATCTTCAGTGCTGTTACTCTGTTAGCGATTGTTTGGCA
TGTAAAAAAGTGTGCTTTCTTGTAAAAATACCATTTTCTAGTTCGCACCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50976.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis